Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000568A_C01 KMC000568A_c01
(548 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_192999.1| origin recognition complex subunit 1 -like prot... 86 2e-16
ref|NP_567440.1| replication control protein 1 like; protein id:... 86 3e-16
pir||G71409 probable replication control protein - Arabidopsis t... 86 3e-16
gb|AAK69447.1|AF277982_1 origin recognition complex 1 [Arabidops... 83 2e-15
gb|AAL10452.1|AF417481_1 origin recognition complex subunit 1 [Z... 79 5e-14
>ref|NP_192999.1| origin recognition complex subunit 1 -like protein; protein id:
At4g12620.1 [Arabidopsis thaliana]
gi|25407525|pir||E85135 hypothetical protein AT4g12620
[imported] - Arabidopsis thaliana
gi|5823573|emb|CAB53755.1| origin recognition complex
subunit 1-like protein [Arabidopsis thaliana]
gi|7267964|emb|CAB78305.1| origin recognition complex
subunit 1-like protein [Arabidopsis thaliana]
Length = 813
Score = 86.3 bits (212), Expect = 2e-16
Identities = 39/46 (84%), Positives = 42/46 (90%)
Frame = -3
Query: 543 LGECRIILCEAGAKHRLQKLQLNFPSDDVAFSLRDCKDLPWLSKYL 406
LGECRIILCE G KHRLQKLQLNFPSDDVAF+L+D KDLPWL+ YL
Sbjct: 768 LGECRIILCEPGEKHRLQKLQLNFPSDDVAFALKDNKDLPWLANYL 813
>ref|NP_567440.1| replication control protein 1 like; protein id: At4g14700.1,
supported by cDNA: gi_14582311 [Arabidopsis thaliana]
Length = 809
Score = 85.9 bits (211), Expect = 3e-16
Identities = 38/46 (82%), Positives = 42/46 (90%)
Frame = -3
Query: 543 LGECRIILCEAGAKHRLQKLQLNFPSDDVAFSLRDCKDLPWLSKYL 406
LGECRI+LCE G KHRLQKLQLNFPSDDVAF+L+D KDLPWL+ YL
Sbjct: 764 LGECRIVLCEPGEKHRLQKLQLNFPSDDVAFALKDNKDLPWLANYL 809
>pir||G71409 probable replication control protein - Arabidopsis thaliana
gi|2244826|emb|CAB10249.1| replication control protein 1
like [Arabidopsis thaliana] gi|7268176|emb|CAB78512.1|
replication control protein 1 like [Arabidopsis
thaliana]
Length = 771
Score = 85.9 bits (211), Expect = 3e-16
Identities = 38/46 (82%), Positives = 42/46 (90%)
Frame = -3
Query: 543 LGECRIILCEAGAKHRLQKLQLNFPSDDVAFSLRDCKDLPWLSKYL 406
LGECRI+LCE G KHRLQKLQLNFPSDDVAF+L+D KDLPWL+ YL
Sbjct: 726 LGECRIVLCEPGEKHRLQKLQLNFPSDDVAFALKDNKDLPWLANYL 771
>gb|AAK69447.1|AF277982_1 origin recognition complex 1 [Arabidopsis thaliana]
Length = 809
Score = 82.8 bits (203), Expect = 2e-15
Identities = 37/45 (82%), Positives = 40/45 (88%)
Frame = -3
Query: 543 LGECRIILCEAGAKHRLQKLQLNFPSDDVAFSLRDCKDLPWLSKY 409
LGECRI LCE G KHRLQKLQLNFPSDDVAF+L+D KDLPWL+ Y
Sbjct: 764 LGECRIALCEPGEKHRLQKLQLNFPSDDVAFALKDNKDLPWLANY 808
>gb|AAL10452.1|AF417481_1 origin recognition complex subunit 1 [Zea mays]
Length = 810
Score = 78.6 bits (192), Expect = 5e-14
Identities = 34/47 (72%), Positives = 41/47 (86%)
Frame = -3
Query: 546 KLGECRIILCEAGAKHRLQKLQLNFPSDDVAFSLRDCKDLPWLSKYL 406
KLGE +IILCE G KH+LQK+QLN+PSDDV F+L++ DLPWLSKYL
Sbjct: 764 KLGESKIILCEEGTKHKLQKVQLNYPSDDVTFALKESPDLPWLSKYL 810
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 430,203,392
Number of Sequences: 1393205
Number of extensions: 8537009
Number of successful extensions: 15017
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 14767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15017
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
