Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000563A_C01 KMC000563A_c01
(588 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB78683.1| P0452F10.20 [Oryza sativa (japonica cultivar-gro... 60 2e-08
ref|NP_189106.1| hypothetical protein; protein id: At3g24630.1 [... 52 4e-06
ref|NP_199085.1| unknown protein; protein id: At5g42710.1 [Arabi... 37 0.24
gb|AAN65013.1| putative glutamic acid-rich protein [Oryza sativa... 36 0.41
ref|XP_219178.1| similar to olfactory receptor MOR4-1 [Mus muscu... 32 7.8
>dbj|BAB78683.1| P0452F10.20 [Oryza sativa (japonica cultivar-group)]
Length = 775
Score = 60.5 bits (145), Expect = 2e-08
Identities = 30/99 (30%), Positives = 49/99 (49%)
Frame = -3
Query: 583 HISLGRLVEEIHNAIENLTSYCENPGKKLLLDCVYTMMERDMTCGHGVINGIWSWGWRHG 404
+ SL L+ +I +A L+ Y E+ D +Y +E+D+ C IN +W GW
Sbjct: 684 YFSLEALLTDIRDATRKLSIYTEDDDGCTTKDTLYMKLEKDLRCTDASINSVWDMGWEDW 743
Query: 403 FSADEAEPVVSEVGNLVLSGLIEEVIANL*LLS*DIWIY 287
+E + + +VG +LSGLIEE D+W++
Sbjct: 744 IFMEETQCFIRDVGESILSGLIEEAAL-------DMWVH 775
>ref|NP_189106.1| hypothetical protein; protein id: At3g24630.1 [Arabidopsis
thaliana] gi|9279792|dbj|BAB01213.1|
gene_id:MSD24.1~unknown protein [Arabidopsis thaliana]
Length = 724
Score = 52.4 bits (124), Expect = 4e-06
Identities = 26/89 (29%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Frame = -3
Query: 580 ISLGRLVEEIHNAIENLTSYCE--NPGKKLLLDCVYTMMERDMTCGHG-VINGIWSWGWR 410
+ + L+ E+ + E+LTSY + + + + ++ ++E+D+ + +G+W GWR
Sbjct: 636 LDIDELLTEVCDGFESLTSYKDTFSGQNSFVKESIHLVLEKDLKGKKTEMTSGVWDLGWR 695
Query: 409 HGFSADEAEPVVSEVGNLVLSGLIEEVIA 323
F DE V+++ L+LSGLI+E+I+
Sbjct: 696 SEFQIDETYEAVADLEKLILSGLIQEIIS 724
>ref|NP_199085.1| unknown protein; protein id: At5g42710.1 [Arabidopsis thaliana]
gi|10177274|dbj|BAB10627.1| gene_id:MJB21.8~unknown
protein [Arabidopsis thaliana]
Length = 807
Score = 36.6 bits (83), Expect = 0.24
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Frame = -3
Query: 577 SLGRLVEEIHNAIENLTSYCENPGKKLLLDCVYT------MMERDMTCGHGVINGIWSWG 416
SL L+ +I +E L +Y DC ++ERD+ +N +W G
Sbjct: 719 SLDHLIRQISKELEKLRAYGR--------DCHIGSHVEDYVLERDVHYKDPYLNSMWDMG 770
Query: 415 WRHGFSA-DEAEPVVSEVGNLVLSGLIEEVIANL 317
W A E + V+ ++ V SGL+EE+ +L
Sbjct: 771 WNDSMLAFIEKDDVMRDIEREVFSGLLEEITRDL 804
>gb|AAN65013.1| putative glutamic acid-rich protein [Oryza sativa (japonica
cultivar-group)]
Length = 943
Score = 35.8 bits (81), Expect = 0.41
Identities = 26/93 (27%), Positives = 44/93 (46%), Gaps = 3/93 (3%)
Frame = -3
Query: 574 LGRLVEEIHNAIE--NLTSYCENPGKKLLLDCVYTMMERDMTCGHGVINGIWSWGW-RHG 404
L L+ E+ IE N++ ++ G+ + + ++ RDM H N +W +GW R
Sbjct: 841 LDDLIMELDGDIESLNISKKSQHLGEDCTAENLRMILHRDMQNNHPDANSMWDFGWNRIS 900
Query: 403 FSADEAEPVVSEVGNLVLSGLIEEVIANL*LLS 305
E VV ++ +L G+I +V L LS
Sbjct: 901 DLPIERNEVVRDLEKNILGGMITDVARELIELS 933
>ref|XP_219178.1| similar to olfactory receptor MOR4-1 [Mus musculus] [Rattus
norvegicus]
Length = 304
Score = 31.6 bits (70), Expect = 7.8
Identities = 21/71 (29%), Positives = 33/71 (45%), Gaps = 3/71 (4%)
Frame = -2
Query: 227 DIRVESVSCRS---CIVLLLKVFLF*NSIILIHLVYHSCTLPSHFKPLQTCTRGVSWVMV 57
DIR S S C +LL V + + ++++H V + K LQTC +S V+V
Sbjct: 183 DIRFNSFYALSLVICTLLLDAVLILASYVMILHTVLSIASREERIKSLQTCVSHISAVLV 242
Query: 56 IWCHFHRLLLV 24
+ L +V
Sbjct: 243 FYIPIIGLTMV 253
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 503,965,499
Number of Sequences: 1393205
Number of extensions: 10478274
Number of successful extensions: 27115
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 26365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27111
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
