Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000562A_C01 KMC000562A_c01
(448 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_702272.1| hypothetical protein [Plasmodium falciparum 3D7... 34 0.46
emb|CAC42230.1| Krueppel-like protein [Plasmodium falciparum 3D7] 33 1.0
gb|EAA22315.1| FAD binding domain of DNA photolyase, putative [P... 32 1.4
ref|XP_139578.1| similar to hypothetical protein DKFZp434J0113 [... 32 1.4
gb|AAD10300.1| unknown [Choristoneura fumiferana nucleopolyhedro... 31 3.9
>ref|NP_702272.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497453|gb|AAN36996.1|AE014822_31 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 1291
Score = 33.9 bits (76), Expect = 0.46
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Frame = -3
Query: 179 DNTQSNKGNSCRNQINISVLLTNENIFFLHAVRKLNIMY-------FIWILNSSE 36
DN N+ +N + +TNEN+FFL +K+N++Y F WI+ + E
Sbjct: 1165 DNNLKVFVNNIKNNNMLKKRITNENMFFLDVAQKVNMIYICIYKYLFNWIIKNLE 1219
>emb|CAC42230.1| Krueppel-like protein [Plasmodium falciparum 3D7]
Length = 1266
Score = 32.7 bits (73), Expect = 1.0
Identities = 18/55 (32%), Positives = 31/55 (55%)
Frame = -3
Query: 179 DNTQSNKGNSCRNQINISVLLTNENIFFLHAVRKLNIMYFIWILNSSELFITIFL 15
DN N+ +N + +TNEN+FFL +K+N++Y I I ++I I++
Sbjct: 1165 DNNLKVFVNNIKNNNMLKKRITNENMFFLDVAQKVNMIY-ICIYKYVYIYIYIYI 1218
>gb|EAA22315.1| FAD binding domain of DNA photolyase, putative [Plasmodium yoelii
yoelii]
Length = 849
Score = 32.3 bits (72), Expect = 1.4
Identities = 19/45 (42%), Positives = 25/45 (55%)
Frame = -3
Query: 266 YGSDKSYPQNGKRLHR*TKIEVMHSRCI*DNTQSNKGNSCRNQIN 132
Y S+K N K H +K E M+S+C NT+ N+ NS N IN
Sbjct: 174 YMSNKHGDTNVKDSHTDSKQEHMNSKCGYINTKDNRANSKHNPIN 218
>ref|XP_139578.1| similar to hypothetical protein DKFZp434J0113 [Mus musculus]
Length = 978
Score = 32.3 bits (72), Expect = 1.4
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Frame = -1
Query: 397 EVFLFIFLKKKSLGILKLELAI------YISPANIQFFWFQSLVISMMSYMGVIRVTLKT 236
EV L +L+ K+L ++ + + + Y+ IQ+ FQSL + M+ ++G IR T T
Sbjct: 666 EVALPQYLRSKALEVIAIAMDLSILRLQYLCKKYIQYRRFQSLRLEMIKHIGAIRQTRVT 725
Query: 235 EK 230
K
Sbjct: 726 SK 727
>gb|AAD10300.1| unknown [Choristoneura fumiferana nucleopolyhedrovirus]
Length = 311
Score = 30.8 bits (68), Expect = 3.9
Identities = 13/34 (38%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = -1
Query: 217 EQKLKSCIQGAFETILKATREIPVETK*T-LVCF 119
+++L++C+QGAFE + + T+ + V+ T L CF
Sbjct: 93 QRRLQACVQGAFENLTQLTKNVRVQDDLTVLKCF 126
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 349,487,614
Number of Sequences: 1393205
Number of extensions: 6751086
Number of successful extensions: 14768
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 14352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14767
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 6622363848
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
