KMC000552A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC000552A_C01 KMC000552A_c01
agcaagtatcctttgTCGGTGATCATTTCAAAGCAGAGCACAGCTCAACATGACTACAAA
TTACATGCATTTCTCAAGAAAGTAGGTCTATGGAATGGCTCATGATAAAAGAAAATTCTA
CACTTTCAAATTGCACCATTTTCTTTTCTATAAATATTGTAGTCGGACTACAGATGTAAT
CTTCACGGAGCACCACAAATTCTAGAGCCTCAACTTCAGCTTTCAAATCATTTTCACTTA
CGAACTTTTCAATGTAGGATGCAATACTATTTTCTCATCTGTGTGAACAGCTCAGGTGGT
TTACTACCTCCAAAACCACCACTTCCTGGGTTGCTAAATGCCCCAAACCCACCACCTGAG
CCAGCTCCTCCAAATCCACCAGCTGAAGGAACAGCACCAAAACCACCACCAAATCCACCA
CTAGTGGGAGCAGCAGCTGCACCAAACCCACCACCAGTGGAAGCAGCACCACCAAATCCA
CCACTAGTGGGAGCAGCAGCT


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC000552A_C01 KMC000552A_c01
         (501 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAK59573.2| unknown protein [Arabidopsis thaliana]                  72  4e-12
pir||H96597 hypothetical protein T5A14.5 [imported] - Arabidopsi...    72  4e-12
ref|NP_564694.1| expressed protein; protein id: At1g55540.1 [Ara...    72  4e-12
ref|NP_031884.1| diaphanous homolog 1 (Drosophila) [Mus musculus...    71  6e-12
ref|NP_188682.1| glycine-rich protein, putative; protein id: At3...    69  2e-11

>gb|AAK59573.2| unknown protein [Arabidopsis thaliana]
          Length = 829

 Score = 72.0 bits (175), Expect = 4e-12
 Identities = 45/90 (50%), Positives = 48/90 (53%), Gaps = 13/90 (14%)
 Frame = -2

Query: 500  AAAPTSGGFGGAASTGGGFGAAAAPTSGGFGGGFGAVPSAGGFGGAGSGGGFGAF----- 336
            A A  SGGF GAA  GGG G     +  G  GGF    S+GGF GA  GGGFG F     
Sbjct: 740  ALASGSGGFAGAAPGGGGGGFGGLGSGTGGFGGFAPQGSSGGFAGAAGGGGFGGFGGQAQ 799

Query: 335  SNPGSGG---FGGS-----KPPELFTQMRK 270
               G GG   FGG+     KP ELFTQMRK
Sbjct: 800  GQAGGGGFSAFGGNSGATGKPSELFTQMRK 829

 Score = 58.2 bits (139), Expect = 5e-08
 Identities = 37/76 (48%), Positives = 40/76 (51%), Gaps = 10/76 (13%)
 Frame = -2

Query: 494 APTSGGFGGAASTGGGFGAAAAPTSGGFGG-------GFGAVPS-AGGFGGAGSGGGFGA 339
           AP SGGF  A S+  G  AA A    GF G       GF A+ S +GGF GA  GGG G 
Sbjct: 700 APASGGFAAAGSSATGGFAAMASAGRGFAGASSTPTGGFAALASGSGGFAGAAPGGGGGG 759

Query: 338 FSNPGS--GGFGGSKP 297
           F   GS  GGFGG  P
Sbjct: 760 FGGLGSGTGGFGGFAP 775

 Score = 45.4 bits (106), Expect = 4e-04
 Identities = 27/70 (38%), Positives = 33/70 (46%), Gaps = 7/70 (10%)
 Frame = -2

Query: 482 GGFGGAASTGGGFGAAAAPTSGGFGG-----GFGAVPSAGGFGGAGSG--GGFGAFSNPG 324
           G FG +   G G   A   +  GFGG     G    P++GGF  AGS   GGF A ++ G
Sbjct: 665 GSFGQSRQIGAGLPGATFGSPTGFGGSNPGSGLPNAPASGGFAAAGSSATGGFAAMASAG 724

Query: 323 SGGFGGSKPP 294
            G  G S  P
Sbjct: 725 RGFAGASSTP 734

 Score = 33.9 bits (76), Expect = 1.1
 Identities = 22/76 (28%), Positives = 27/76 (34%), Gaps = 16/76 (21%)
 Frame = -2

Query: 491 PTSGGFGGAASTGGG----------------FGAAAAPTSGGFGGGFGAVPSAGGFGGAG 360
           P   GFG  +  GGG                 GA     + G   GFG      G   A 
Sbjct: 642 PAQSGFGQPSQIGGGQQALGSVLGSFGQSRQIGAGLPGATFGSPTGFGGSNPGSGLPNAP 701

Query: 359 SGGGFGAFSNPGSGGF 312
           + GGF A  +  +GGF
Sbjct: 702 ASGGFAAAGSSATGGF 717

>pir||H96597 hypothetical protein T5A14.5 [imported] - Arabidopsis thaliana
            gi|4204261|gb|AAD10642.1| Hypothetical protein
            [Arabidopsis thaliana]
          Length = 1804

 Score = 72.0 bits (175), Expect = 4e-12
 Identities = 45/90 (50%), Positives = 48/90 (53%), Gaps = 13/90 (14%)
 Frame = -2

Query: 500  AAAPTSGGFGGAASTGGGFGAAAAPTSGGFGGGFGAVPSAGGFGGAGSGGGFGAF----- 336
            A A  SGGF GAA  GGG G     +  G  GGF    S+GGF GA  GGGFG F     
Sbjct: 1715 ALASGSGGFAGAAPGGGGGGFGGLGSGTGGFGGFAPQGSSGGFAGAAGGGGFGGFGGQAQ 1774

Query: 335  SNPGSGG---FGGS-----KPPELFTQMRK 270
               G GG   FGG+     KP ELFTQMRK
Sbjct: 1775 GQAGGGGFSAFGGNSGATGKPSELFTQMRK 1804

 Score = 58.2 bits (139), Expect = 5e-08
 Identities = 37/76 (48%), Positives = 40/76 (51%), Gaps = 10/76 (13%)
 Frame = -2

Query: 494  APTSGGFGGAASTGGGFGAAAAPTSGGFGG-------GFGAVPS-AGGFGGAGSGGGFGA 339
            AP SGGF  A S+  G  AA A    GF G       GF A+ S +GGF GA  GGG G 
Sbjct: 1675 APASGGFAAAGSSATGGFAAMASAGRGFAGASSTPTGGFAALASGSGGFAGAAPGGGGGG 1734

Query: 338  FSNPGS--GGFGGSKP 297
            F   GS  GGFGG  P
Sbjct: 1735 FGGLGSGTGGFGGFAP 1750

 Score = 45.4 bits (106), Expect = 4e-04
 Identities = 27/70 (38%), Positives = 33/70 (46%), Gaps = 7/70 (10%)
 Frame = -2

Query: 482  GGFGGAASTGGGFGAAAAPTSGGFGG-----GFGAVPSAGGFGGAGSG--GGFGAFSNPG 324
            G FG +   G G   A   +  GFGG     G    P++GGF  AGS   GGF A ++ G
Sbjct: 1640 GSFGQSRQIGAGLPGATFGSPTGFGGSNPGSGLPNAPASGGFAAAGSSATGGFAAMASAG 1699

Query: 323  SGGFGGSKPP 294
             G  G S  P
Sbjct: 1700 RGFAGASSTP 1709

 Score = 33.9 bits (76), Expect = 1.1
 Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 10/73 (13%)
 Frame = -2

Query: 491  PTSGGFGGAASTGGG----------FGAAAAPTSGGFGGGFGAVPSAGGFGGAGSGGGFG 342
            P   GFG  +  GGG          FG +    +G  G  FG   S  GFGG+  G G  
Sbjct: 1617 PAQSGFGQPSQIGGGQQALGSVLGSFGQSRQIGAGLPGATFG---SPTGFGGSNPGSGLP 1673

Query: 341  AFSNPGSGGFGGS 303
              + P SGGF  +
Sbjct: 1674 --NAPASGGFAAA 1684

>ref|NP_564694.1| expressed protein; protein id: At1g55540.1 [Arabidopsis thaliana]
          Length = 915

 Score = 72.0 bits (175), Expect = 4e-12
 Identities = 45/90 (50%), Positives = 48/90 (53%), Gaps = 13/90 (14%)
 Frame = -2

Query: 500  AAAPTSGGFGGAASTGGGFGAAAAPTSGGFGGGFGAVPSAGGFGGAGSGGGFGAF----- 336
            A A  SGGF GAA  GGG G     +  G  GGF    S+GGF GA  GGGFG F     
Sbjct: 826  ALASGSGGFAGAAPGGGGGGFGGLGSGTGGFGGFAPQGSSGGFAGAAGGGGFGGFGGQAQ 885

Query: 335  SNPGSGG---FGGS-----KPPELFTQMRK 270
               G GG   FGG+     KP ELFTQMRK
Sbjct: 886  GQAGGGGFSAFGGNSGATGKPSELFTQMRK 915

 Score = 58.2 bits (139), Expect = 5e-08
 Identities = 37/76 (48%), Positives = 40/76 (51%), Gaps = 10/76 (13%)
 Frame = -2

Query: 494  APTSGGFGGAASTGGGFGAAAAPTSGGFGG-------GFGAVPS-AGGFGGAGSGGGFGA 339
            AP SGGF  A S+  G  AA A    GF G       GF A+ S +GGF GA  GGG G 
Sbjct: 786  APASGGFAAAGSSATGGFAAMASAGRGFAGASSTPTGGFAALASGSGGFAGAAPGGGGGG 845

Query: 338  FSNPGS--GGFGGSKP 297
            F   GS  GGFGG  P
Sbjct: 846  FGGLGSGTGGFGGFAP 861

 Score = 45.4 bits (106), Expect = 4e-04
 Identities = 27/70 (38%), Positives = 33/70 (46%), Gaps = 7/70 (10%)
 Frame = -2

Query: 482 GGFGGAASTGGGFGAAAAPTSGGFGG-----GFGAVPSAGGFGGAGSG--GGFGAFSNPG 324
           G FG +   G G   A   +  GFGG     G    P++GGF  AGS   GGF A ++ G
Sbjct: 751 GSFGQSRQIGAGLPGATFGSPTGFGGSNPGSGLPNAPASGGFAAAGSSATGGFAAMASAG 810

Query: 323 SGGFGGSKPP 294
            G  G S  P
Sbjct: 811 RGFAGASSTP 820

 Score = 33.9 bits (76), Expect = 1.1
 Identities = 22/76 (28%), Positives = 27/76 (34%), Gaps = 16/76 (21%)
 Frame = -2

Query: 491 PTSGGFGGAASTGGG----------------FGAAAAPTSGGFGGGFGAVPSAGGFGGAG 360
           P   GFG  +  GGG                 GA     + G   GFG      G   A 
Sbjct: 728 PAQSGFGQPSQIGGGQQALGSVLGSFGQSRQIGAGLPGATFGSPTGFGGSNPGSGLPNAP 787

Query: 359 SGGGFGAFSNPGSGGF 312
           + GGF A  +  +GGF
Sbjct: 788 ASGGFAAAGSSATGGF 803

>ref|NP_031884.1| diaphanous homolog 1 (Drosophila) [Mus musculus]
           gi|6014968|sp|O08808|DIA1_MOUSE Diaphanous protein
           homolog 1 (Diaphanous-related formin 1) (DRF1) (mDIA1)
           (p140mDIA) gi|7513624|pir||T31065 diaphanous protein
           homolog p140mDia - mouse gi|2114473|gb|AAC53280.1|
           p140mDia [Mus musculus]
          Length = 1255

 Score = 71.2 bits (173), Expect = 6e-12
 Identities = 39/76 (51%), Positives = 44/76 (57%), Gaps = 7/76 (9%)
 Frame = +1

Query: 295 GGLLPPKPPLPGLLNAPNPPPEPA----PPNPPAEGTAPKPPPNPPLVGAAAAPNPPPVE 462
           GG++PP PPLP     P PPP P     PP P   G+A  PPP PPL G A+ P PPP+ 
Sbjct: 596 GGVVPPSPPLPPGTCIPPPPPLPGGACIPPPPQLPGSAAIPPP-PPLPGVASIPPPPPLP 654

Query: 463 AA---PPNPPLVGAAA 501
            A   PP PPL GA A
Sbjct: 655 GATAIPPPPPLPGATA 670

 Score = 68.6 bits (166), Expect = 4e-11
 Identities = 34/72 (47%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
 Frame = +1

Query: 304 LPPKPPLPGLLNAPNPPPEPA----PPNPPAEGTAPKPPPNPPLVGAAAAPNPPPVEAA- 468
           +PP PPLPG    P PPP P     PP PP  G    PPP PPL G+   P PPP+    
Sbjct: 647 IPPPPPLPGATAIPPPPPLPGATAIPPPPPLPGGTGIPPPPPPLPGSVGVPPPPPLPGGP 706

Query: 469 ---PPNPPLVGA 495
              PP PP  GA
Sbjct: 707 GLPPPPPPFPGA 718

 Score = 68.2 bits (165), Expect = 5e-11
 Identities = 38/73 (52%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
 Frame = +1

Query: 295 GGLLPPKPPLPGLLNAPNPPPEPA----PPNPPAEGTAPKPPPNPPLVGAAAAPNPPPVE 462
           G  +PP PPLPG    P PP  P     PP PP  G A  PPP PPL GA A P PPP+ 
Sbjct: 608 GTCIPPPPPLPGGACIPPPPQLPGSAAIPPPPPLPGVASIPPP-PPLPGATAIPPPPPLP 666

Query: 463 AA---PPNPPLVG 492
            A   PP PPL G
Sbjct: 667 GATAIPPPPPLPG 679

 Score = 67.0 bits (162), Expect = 1e-10
 Identities = 36/75 (48%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
 Frame = +1

Query: 295 GGLLPPKPPLPGLLNAPNPPPEPA----PPNPPAEGTAPKPPPNPPLVGAAAAPNPPPVE 462
           G  +PP P LPG    P PPP P     PP PP  G    PPP PPL GA A P PPP+ 
Sbjct: 620 GACIPPPPQLPGSAAIPPPPPLPGVASIPPPPPLPGATAIPPP-PPLPGATAIPPPPPLP 678

Query: 463 AA----PPNPPLVGA 495
                 PP PPL G+
Sbjct: 679 GGTGIPPPPPPLPGS 693

 Score = 67.0 bits (162), Expect = 1e-10
 Identities = 38/71 (53%), Positives = 42/71 (58%), Gaps = 6/71 (8%)
 Frame = +1

Query: 307 PPKPPLPGLLNAPNPPPEPA---PPNPPAEGTAPKPPPNPPLVGAAAAPNPPP---VEAA 468
           PP PPLPG +  P+PP  P    PP PP  G A  PPP P L G+AA P PPP   V + 
Sbjct: 589 PPPPPLPGGVVPPSPPLPPGTCIPPPPPLPGGACIPPP-PQLPGSAAIPPPPPLPGVASI 647

Query: 469 PPNPPLVGAAA 501
           PP PPL GA A
Sbjct: 648 PPPPPLPGATA 658

 Score = 64.7 bits (156), Expect = 6e-10
 Identities = 31/65 (47%), Positives = 32/65 (48%), Gaps = 5/65 (7%)
 Frame = +1

Query: 304 LPPKPPLPGLLNAPNPPPE-----PAPPNPPAEGTAPKPPPNPPLVGAAAAPNPPPVEAA 468
           +PP PPLPG    P PPP        PP PP  G    PPP PP  GA   P PPP    
Sbjct: 671 IPPPPPLPGGTGIPPPPPPLPGSVGVPPPPPLPGGPGLPPPPPPFPGAPGIPPPPPGMGV 730

Query: 469 PPNPP 483
           PP PP
Sbjct: 731 PPPPP 735

 Score = 56.2 bits (134), Expect = 2e-07
 Identities = 30/68 (44%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
 Frame = +1

Query: 298 GLLPPKPPLPGLLNAPNPPPEPA----PPNPPAEGTAPKPPPNPPLVGAAAAPNPPPVEA 465
           G+ PP PPLPG +  P PPP P     PP PP    AP  PP PP +G    P PPP   
Sbjct: 682 GIPPPPPPLPGSVGVPPPPPLPGGPGLPPPPPPFPGAPGIPPPPPGMGV---PPPPPFGF 738

Query: 466 APPNPPLV 489
             P  P++
Sbjct: 739 GVPAAPVL 746

 Score = 45.4 bits (106), Expect = 4e-04
 Identities = 29/72 (40%), Positives = 31/72 (42%), Gaps = 2/72 (2%)
 Frame = +1

Query: 289 SSGGLLPPKPPLPGLLNAPNPPPEPAPPNPPAEGTAPKPPPNPPLVGAAAAPNP--PPVE 462
           SS   +PP PPLPG      PPP               PPP  PL G    P+P  PP  
Sbjct: 566 SSSAAVPPAPPLPGDSGTVIPPP---------------PPPP-PLPGGVVPPSPPLPPGT 609

Query: 463 AAPPNPPLVGAA 498
             PP PPL G A
Sbjct: 610 CIPPPPPLPGGA 621

 Score = 41.6 bits (96), Expect = 0.005
 Identities = 26/55 (47%), Positives = 27/55 (48%), Gaps = 5/55 (9%)
 Frame = +1

Query: 304 LPPKPPLPGLLNAPNPPPE-PA----PPNPPAEGTAPKPPPNPPLVGAAAAPNPP 453
           +PP PPLPG    P PPP  P     PP PP  G    PPP P   G  AAP  P
Sbjct: 696 VPPPPPLPGGPGLPPPPPPFPGAPGIPPPPPGMGV---PPPPPFGFGVPAAPVLP 747

 Score = 39.3 bits (90), Expect = 0.025
 Identities = 22/60 (36%), Positives = 23/60 (37%)
 Frame = +1

Query: 298 GLLPPKPPLPGLLNAPNPPPEPAPPNPPAEGTAPKPPPNPPLVGAAAAPNPPPVEAAPPN 477
           GL PP PP PG    P PPP    P PP  G      P  P          P V+   PN
Sbjct: 707 GLPPPPPPFPGAPGIPPPPPGMGVPPPPPFGFGVPAAPVLPFGLTPKKVYKPEVQLRRPN 766

 Score = 32.3 bits (72), Expect = 3.1
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +1

Query: 379 PAEGTAPKPPPNPPLVGAAAAPNPPPVEAAPPNPPLVG 492
           P+  ++   PP PPL G +    PPP    PP PPL G
Sbjct: 563 PSVSSSAAVPPAPPLPGDSGTVIPPP----PPPPPLPG 596

>ref|NP_188682.1| glycine-rich protein, putative; protein id: At3g20470.1, supported
           by cDNA: gi_15010655, supported by cDNA: gi_16323289
           [Arabidopsis thaliana] gi|9294567|dbj|BAB02830.1|
           gene_id:MQC12.26~pir||JQ1064~similar to unknown protein
           [Arabidopsis thaliana] gi|15010656|gb|AAK73987.1|
           AT3g20470/MQC12_23 [Arabidopsis thaliana]
           gi|16323290|gb|AAL15400.1| AT3g20470/MQC12_23
           [Arabidopsis thaliana]
          Length = 174

 Score = 69.3 bits (168), Expect = 2e-11
 Identities = 37/65 (56%), Positives = 38/65 (57%), Gaps = 2/65 (3%)
 Frame = -2

Query: 494 APTSGGFGGAASTGGGFGAAAAPTSGG-FGGGFGAVPSAGGFGGAGSGGGFGAFSNPG-S 321
           A + GG GG    GGGFG  A   SGG FGGG GA    GG GGAG GGGFG     G  
Sbjct: 97  AGSGGGLGGGGGAGGGFGGGAGGGSGGGFGGGAGAGGGLGGGGGAGGGGGFGGGGGSGIG 156

Query: 320 GGFGG 306
           GGFGG
Sbjct: 157 GGFGG 161

 Score = 60.8 bits (146), Expect = 8e-09
 Identities = 34/62 (54%), Positives = 37/62 (58%), Gaps = 3/62 (4%)
 Frame = -2

Query: 482 GGFGGAASTGGGFGAAAAPTSGGFGGGFGAVPSAGG--FGGAGSGGGFGAFSNPGS-GGF 312
           GG GG A  GGG G  A    GG GGGFG    +GG   GG G+GGGFG  +  GS GGF
Sbjct: 69  GGLGGGAGGGGGLGGGAG---GGAGGGFGGGAGSGGGLGGGGGAGGGFGGGAGGGSGGGF 125

Query: 311 GG 306
           GG
Sbjct: 126 GG 127

 Score = 60.8 bits (146), Expect = 8e-09
 Identities = 36/71 (50%), Positives = 37/71 (51%), Gaps = 5/71 (7%)
 Frame = -2

Query: 500 AAAPTSGGFGGAASTGGGFGAAAAPTSGGFGGGFGAVPSAGGFGGA-----GSGGGFGAF 336
           A     GGFGG A +GGG G       GGFGGG G   S GGFGG      G GGG GA 
Sbjct: 85  AGGGAGGGFGGGAGSGGGLGGGGG-AGGGFGGGAGG-GSGGGFGGGAGAGGGLGGGGGAG 142

Query: 335 SNPGSGGFGGS 303
              G GG GGS
Sbjct: 143 GGGGFGGGGGS 153

 Score = 57.8 bits (138), Expect = 7e-08
 Identities = 33/61 (54%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
 Frame = -2

Query: 482 GGFGGAAS--TGGGFGAAAAPTSGGFGGGFGAVPSAGGFGGAGSGGGFGAFSNPGSGGFG 309
           GG GG A    GGGFG  A  + GG GGG GA    GG  G GSGGGFG  +  G GG G
Sbjct: 79  GGLGGGAGGGAGGGFGGGAG-SGGGLGGGGGAGGGFGGGAGGGSGGGFGGGAGAG-GGLG 136

Query: 308 G 306
           G
Sbjct: 137 G 137

 Score = 57.0 bits (136), Expect = 1e-07
 Identities = 29/54 (53%), Positives = 32/54 (58%), Gaps = 1/54 (1%)
 Frame = -2

Query: 500 AAAPTSGGFGGAASTGGGF-GAAAAPTSGGFGGGFGAVPSAGGFGGAGSGGGFG 342
           A   + GGFGG A  GGG  G   A   GGFGGG G+    G  GGAG+GGGFG
Sbjct: 117 AGGGSGGGFGGGAGAGGGLGGGGGAGGGGGFGGGGGSGIGGGFGGGAGAGGGFG 170

 Score = 56.6 bits (135), Expect = 2e-07
 Identities = 31/59 (52%), Positives = 31/59 (52%)
 Frame = -2

Query: 482 GGFGGAASTGGGFGAAAAPTSGGFGGGFGAVPSAGGFGGAGSGGGFGAFSNPGSGGFGG 306
           GGFGG    GGG G       GG GGG G     G  GGAGSGGG G     G GGFGG
Sbjct: 63  GGFGGGGGLGGGAGGG-----GGLGGGAGGGAGGGFGGGAGSGGGLGGGGGAG-GGFGG 115

 Score = 54.7 bits (130), Expect = 6e-07
 Identities = 32/60 (53%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
 Frame = -2

Query: 482 GGFGGAASTGGGFGAAAAPTSG-GFGGGFGAVPSAGGFGGAGSGGGFGAFSNPGSGGFGG 306
           GG GG   +GGGFG  A    G G GGG G     GG GG+G GGGFG  +  G GGFGG
Sbjct: 115 GGAGGG--SGGGFGGGAGAGGGLGGGGGAGGGGGFGGGGGSGIGGGFGGGAGAG-GGFGG 171

 Score = 52.8 bits (125), Expect = 2e-06
 Identities = 30/62 (48%), Positives = 33/62 (52%), Gaps = 2/62 (3%)
 Frame = -2

Query: 482 GGFGGAASTGGGFGAAAAPTSGGFGGGFGAVPSAGGFGGAGSGGGF--GAFSNPGSGGFG 309
           GG GG +  GGG G       GG GGG G     GG  G G+GGGF  GA S  G GG G
Sbjct: 51  GGIGGGSGLGGGGGFGGG---GGLGGGAGGGGGLGGGAGGGAGGGFGGGAGSGGGLGGGG 107

Query: 308 GS 303
           G+
Sbjct: 108 GA 109

 Score = 50.4 bits (119), Expect = 1e-05
 Identities = 29/61 (47%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = -2

Query: 482 GGFGGAASTGGGFGAAAAPTSGGFGGGFGAVPSAGGFGG--AGSGGGFGAFSNPGSGGFG 309
           GG GG    GGG G       GGFGGG G    AGG GG   G+GGG G     G+G  G
Sbjct: 45  GGLGGGGGIGGGSGLGGG---GGFGGGGGLGGGAGGGGGLGGGAGGGAGGGFGGGAGSGG 101

Query: 308 G 306
           G
Sbjct: 102 G 102

 Score = 48.5 bits (114), Expect = 4e-05
 Identities = 28/57 (49%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -2

Query: 473 GGAASTGGGFGAAAA-PTSGGFGGGFGAVPSAGGFGGAGSGGGFGAFSNPGSGGFGG 306
           GG    GGG G  +     GGFGGG G    AGG GG G G G GA      GGFGG
Sbjct: 44  GGGLGGGGGIGGGSGLGGGGGFGGGGGLGGGAGGGGGLGGGAGGGA-----GGGFGG 95

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 505,544,638
Number of Sequences: 1393205
Number of extensions: 15856347
Number of successful extensions: 665237
Number of sequences better than 10.0: 16145
Number of HSP's better than 10.0 without gapping: 108495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360240
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 GNLf005c03 BP075068 1 436
2 SPDL062a11_f BP055839 13 505
3 GENLf022h01 BP063532 23 505




Lotus japonicus
Kazusa DNA Research Institute