Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000542A_C01 KMC000542A_c01
(565 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC06184.1| 110 kDa 4SNc-Tudor domain protein [Pisum sativum] 113 2e-24
dbj|BAB32793.1| 110 kDa 4SNc-Tudor domain protein [Pisum sativum] 113 2e-24
ref|NP_196352.2| putative protein; protein id: At5g07350.1, supp... 104 7e-22
ref|NP_200986.1| 100 kDa coactivator - like protein; protein id:... 103 1e-21
pir||T49874 hypothetical protein T2I1.60 - Arabidopsis thaliana ... 99 5e-20
>dbj|BAC06184.1| 110 kDa 4SNc-Tudor domain protein [Pisum sativum]
Length = 989
Score = 113 bits (282), Expect = 2e-24
Identities = 52/72 (72%), Positives = 60/72 (83%)
Frame = -1
Query: 565 EISVNAAMLQEGLARMEKRNRWDRKERKVGLDSLQKFQDDARKERRGMWQYGDVESDDED 386
EISVNAAMLQEGLARMEKRNRWD+ RK LD+L+ FQ +AR RRG+WQYGD++SDDED
Sbjct: 918 EISVNAAMLQEGLARMEKRNRWDKSARKQALDNLEMFQGEARTSRRGIWQYGDIQSDDED 977
Query: 385 TAPPARKAGAGR 350
TAPP + AG R
Sbjct: 978 TAPPRKPAGGRR 989
>dbj|BAB32793.1| 110 kDa 4SNc-Tudor domain protein [Pisum sativum]
Length = 699
Score = 113 bits (282), Expect = 2e-24
Identities = 52/72 (72%), Positives = 60/72 (83%)
Frame = -1
Query: 565 EISVNAAMLQEGLARMEKRNRWDRKERKVGLDSLQKFQDDARKERRGMWQYGDVESDDED 386
EISVNAAMLQEGLARMEKRNRWD+ RK LD+L+ FQ +AR RRG+WQYGD++SDDED
Sbjct: 628 EISVNAAMLQEGLARMEKRNRWDKSARKQALDNLEMFQGEARTSRRGIWQYGDIQSDDED 687
Query: 385 TAPPARKAGAGR 350
TAPP + AG R
Sbjct: 688 TAPPRKPAGGRR 699
>ref|NP_196352.2| putative protein; protein id: At5g07350.1, supported by cDNA:
gi_18086331 [Arabidopsis thaliana]
gi|18086332|gb|AAL57629.1| AT5g07350/T2I1_60 [Arabidopsis
thaliana]
Length = 991
Score = 104 bits (260), Expect = 7e-22
Identities = 49/73 (67%), Positives = 60/73 (82%)
Frame = -1
Query: 565 EISVNAAMLQEGLARMEKRNRWDRKERKVGLDSLQKFQDDARKERRGMWQYGDVESDDED 386
EISVNAAMLQEG+ARMEKR +W K ++ LD+L+KFQ++ARK R G+WQYGD+ESDDED
Sbjct: 920 EISVNAAMLQEGIARMEKRQKWGHKGKQAALDALEKFQEEARKSRIGIWQYGDIESDDED 979
Query: 385 TAPPARKAGAGRQ 347
T PARK GR+
Sbjct: 980 TG-PARKPAGGRR 991
>ref|NP_200986.1| 100 kDa coactivator - like protein; protein id: At5g61780.1
[Arabidopsis thaliana] gi|10176871|dbj|BAB10078.1|
transcription factor-like protein [Arabidopsis thaliana]
gi|25083258|gb|AAN72055.1| 100 kDa coactivator - like
protein [Arabidopsis thaliana]
Length = 985
Score = 103 bits (258), Expect = 1e-21
Identities = 47/71 (66%), Positives = 59/71 (82%)
Frame = -1
Query: 565 EISVNAAMLQEGLARMEKRNRWDRKERKVGLDSLQKFQDDARKERRGMWQYGDVESDDED 386
EISVNAAMLQEG+ARMEKR RW+ K+++ LD+L+KFQD+ARK R G+W+YGD++SDDED
Sbjct: 916 EISVNAAMLQEGIARMEKRRRWEPKDKQAALDALEKFQDEARKSRTGIWEYGDIQSDDED 975
Query: 385 TAPPARKAGAG 353
P RK G G
Sbjct: 976 NV-PVRKPGRG 985
>pir||T49874 hypothetical protein T2I1.60 - Arabidopsis thaliana
gi|7576173|emb|CAB87924.1| putative protein [Arabidopsis
thaliana]
Length = 1051
Score = 98.6 bits (244), Expect = 5e-20
Identities = 49/78 (62%), Positives = 60/78 (76%), Gaps = 5/78 (6%)
Frame = -1
Query: 565 EISVNAAMLQ-----EGLARMEKRNRWDRKERKVGLDSLQKFQDDARKERRGMWQYGDVE 401
EISVNAAMLQ EG+ARMEKR +W K ++ LD+L+KFQ++ARK R G+WQYGD+E
Sbjct: 920 EISVNAAMLQDDDEQEGIARMEKRQKWGHKGKQAALDALEKFQEEARKSRIGIWQYGDIE 979
Query: 400 SDDEDTAPPARKAGAGRQ 347
SDDEDT PARK GR+
Sbjct: 980 SDDEDTG-PARKPAGGRR 996
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 494,918,874
Number of Sequences: 1393205
Number of extensions: 11031415
Number of successful extensions: 32226
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 31255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32195
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
