Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000529A_C02 KMC000529A_c02
(633 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_704045.1| hypothetical protein [Plasmodium falciparum 3D7... 33 2.4
ref|NP_704113.1| hypothetical protein [Plasmodium falciparum 3D7... 33 4.1
ref|NP_761252.1| Putative intracellular protease/amidase [Vibrio... 32 5.3
ref|NP_113367.1| hypothetical protein [Guillardia theta] gi|2539... 32 5.3
gb|EAA23031.1| hypothetical protein [Plasmodium yoelii yoelii] 32 7.0
>ref|NP_704045.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498783|emb|CAD50853.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 2910
Score = 33.5 bits (75), Expect = 2.4
Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Frame = +3
Query: 96 HNITTLSYY*VLQNSSNLYNVHLSSIEG-EMQYFNLLIKEKKEKSADRKVILKINCNILT 272
+ + +L+ Y +SN H ++I+ E+ YFN I E E D K+++ CNI+
Sbjct: 276 NEMVSLNMYKKNNLTSNFLLNHDNNIDNKELYYFNESINEIHENCTDSKILILKICNIIF 335
Query: 273 QTNTRWFSILFSLLVFCWNMKENYQPQFTWY 365
+ + L +N++++Y+ + +Y
Sbjct: 336 EKKKTKNIHILKQLDLLFNLQKSYENRNIFY 366
>ref|NP_704113.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498851|emb|CAD50928.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 5779
Score = 32.7 bits (73), Expect = 4.1
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = +3
Query: 72 RAIILANSHNITTLSYY*VLQNSSNLYNVHLSSIEGEMQYFNLLIKEKKEKSADRKVILK 251
+ I N N LSY +L+N +N+YN H S + + F + E K K +++
Sbjct: 3533 KCIYYLNDKNYNNLSY--ILENLNNIYNYHDSYLLYTQENFKHIFNECKNKCDQHQLVRN 3590
Query: 252 IN--CNILTQTNTRWFSILFSL 311
I NI T + F + S+
Sbjct: 3591 ITNIYNIYKNTIKQNFHVNLSI 3612
>ref|NP_761252.1| Putative intracellular protease/amidase [Vibrio vulnificus CMCP6]
gi|27361873|gb|AAO10779.1|AE016805_36 Putative
intracellular protease/amidase [Vibrio vulnificus CMCP6]
Length = 212
Score = 32.3 bits (72), Expect = 5.3
Identities = 16/43 (37%), Positives = 22/43 (50%)
Frame = +2
Query: 269 DSNKHKMVFNFILPSGLLLEYERKLSATIHMVSLLKLPQNCFK 397
DSNK K + N ++P+G L +E +S TI L FK
Sbjct: 167 DSNKRKSIQNQLIPAGQLELFEELISTTIQSAELASSHNKAFK 209
>ref|NP_113367.1| hypothetical protein [Guillardia theta] gi|25396813|pir||D90099
hypothetical protein orf773 [imported] - Guillardia
theta nucleomorph gi|13794548|gb|AAK39923.1|AF165818_131
hypothetical protein [Guillardia theta]
Length = 773
Score = 32.3 bits (72), Expect = 5.3
Identities = 26/84 (30%), Positives = 42/84 (49%), Gaps = 11/84 (13%)
Frame = +3
Query: 117 YY*VLQNSSNLYNVHLSSIEGEMQYF--------NLLIKEKKEKSADRKVILKINCNILT 272
YY + + SN+ + + E +F N+LIK+KK SA ++VIL I+ N
Sbjct: 505 YYKLAKRFSNIKIFEILTQISEKIFFCKAKFLITNILIKKKKYTSAKKQVILAISLN--K 562
Query: 273 QTNTRWFS---ILFSLLVFCWNMK 335
+ WF+ I F L + W++K
Sbjct: 563 SSFKLWFTLGYICFLLKDYFWSLK 586
>gb|EAA23031.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 1249
Score = 32.0 bits (71), Expect = 7.0
Identities = 22/69 (31%), Positives = 39/69 (55%)
Frame = +2
Query: 20 YVGRHKSRIISYPKKKRKGNHPCKQS*YHHIVILLGSSKLKQFIQCSSKFYRGRNAIF*S 199
++ KS+ + KK++K K+ Y+H G++K+K +CS+ Y ++I S
Sbjct: 589 FIPSKKSQKKNQKKKQKKKQ---KKIAYNHF----GTNKIKNHFKCSTPQYTNIHSIV-S 640
Query: 200 FNKRKERKK 226
NKRK++KK
Sbjct: 641 INKRKKQKK 649
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 540,872,900
Number of Sequences: 1393205
Number of extensions: 11194654
Number of successful extensions: 24486
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 23867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24483
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
