Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000528A_C01 KMC000528A_c01
(644 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM60952.1| unknown [Arabidopsis thaliana] 47 3e-04
ref|NP_197584.1| putative protein; protein id: At5g20840.1 [Arab... 47 3e-04
pir||T49236 hypothetical protein F7K15.70 - Arabidopsis thaliana... 43 0.004
ref|NP_189908.2| putative protein; protein id: At3g43220.1, supp... 43 0.004
pir||T52535 suppressor of A-kinase protein 1 [validated] - fissi... 32 7.3
>gb|AAM60952.1| unknown [Arabidopsis thaliana]
Length = 100
Score = 46.6 bits (109), Expect = 3e-04
Identities = 21/51 (41%), Positives = 32/51 (62%)
Frame = -2
Query: 643 TVSTSDLGGSSLKGREQTESKLSYNNGRSNTPEEFPDTFVNWVTYGQTLCH 491
T + + G SS KG+E E++LS + + ++FPD+F WV YG+ LCH
Sbjct: 53 TPAMRESGSSSRKGKEPVETELSVH---TKIRDDFPDSFKQWVAYGEALCH 100
>ref|NP_197584.1| putative protein; protein id: At5g20840.1 [Arabidopsis thaliana]
Length = 774
Score = 46.6 bits (109), Expect = 3e-04
Identities = 21/51 (41%), Positives = 32/51 (62%)
Frame = -2
Query: 643 TVSTSDLGGSSLKGREQTESKLSYNNGRSNTPEEFPDTFVNWVTYGQTLCH 491
T + + G SS KG+E E++LS + + ++FPD+F WV YG+ LCH
Sbjct: 727 TPAMRESGSSSRKGKEPVETELSVH---TKIRDDFPDSFKQWVAYGEALCH 774
>pir||T49236 hypothetical protein F7K15.70 - Arabidopsis thaliana
gi|7649362|emb|CAB89043.1| putative protein [Arabidopsis
thaliana]
Length = 794
Score = 42.7 bits (99), Expect = 0.004
Identities = 20/47 (42%), Positives = 27/47 (56%)
Frame = -2
Query: 631 SDLGGSSLKGREQTESKLSYNNGRSNTPEEFPDTFVNWVTYGQTLCH 491
S+ G SS KG+E +K+ E+FPD+F WV YG+ LCH
Sbjct: 757 SESGSSSSKGKEPMGTKIR---------EDFPDSFKEWVAYGEALCH 794
>ref|NP_189908.2| putative protein; protein id: At3g43220.1, supported by cDNA:
gi_20453209 [Arabidopsis thaliana]
Length = 818
Score = 42.7 bits (99), Expect = 0.004
Identities = 20/47 (42%), Positives = 27/47 (56%)
Frame = -2
Query: 631 SDLGGSSLKGREQTESKLSYNNGRSNTPEEFPDTFVNWVTYGQTLCH 491
S+ G SS KG+E +K+ E+FPD+F WV YG+ LCH
Sbjct: 781 SESGSSSSKGKEPMGTKIR---------EDFPDSFKEWVAYGEALCH 818
>pir||T52535 suppressor of A-kinase protein 1 [validated] - fission yeast
(Schizosaccharomyces pombe) gi|747966|gb|AAA67937.1| RFX
family DNA-binding protein
Length = 734
Score = 32.0 bits (71), Expect = 7.3
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +1
Query: 424 LEQAKSIKKMSISAKDHMLQKFNGKVSV-HKSPSSQKYLEIPLACWTVRCC 573
LEQ +K++++ + + L+ K+ + H S +S+K+ ++ CW R C
Sbjct: 59 LEQETELKRLALEHEQYSLESLAEKLRMDHVSANSEKFRQVFGICWLKRAC 109
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 518,835,635
Number of Sequences: 1393205
Number of extensions: 10275675
Number of successful extensions: 27089
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 26109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27078
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27291941472
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
