Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000523A_C01 KMC000523A_c01
(527 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194849.1| DNA topoisomerase I, putative; protein id: At4g... 40 0.017
gb|AAK01502.1| putative amino acid transport protein [Pseudomona... 32 4.6
ref|NP_598239.1| colony stimulating factor 2 receptor, beta 1, l... 32 6.0
gb|AAM00866.1|AF486554_2 RloD [Campylobacter jejuni] 31 7.9
gb|AAM00856.1|AF486552_2 RloD [Campylobacter jejuni] gi|19881272... 31 7.9
>ref|NP_194849.1| DNA topoisomerase I, putative; protein id: At4g31210.1 [Arabidopsis
thaliana] gi|7484926|pir||T04488 DNA topoisomerase
homolog F8F16.30 - Arabidopsis thaliana
gi|2827516|emb|CAA16524.1| DNA topoisomerase like-protein
[Arabidopsis thaliana] gi|7270023|emb|CAB79839.1| DNA
topoisomerase like-protein [Arabidopsis thaliana]
Length = 1179
Score = 40.0 bits (92), Expect = 0.017
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = -3
Query: 522 VPKDMNPRDVTFEKALKFLLGDNVTNTGRPKSEPKVEEDEAVE 394
VPK+ P +VT E+A+K L G NV +GRP EE++ E
Sbjct: 1131 VPKNTEPGEVTLERAMKLLSGKNVRKSGRPPKSILPEEEKGDE 1173
>gb|AAK01502.1| putative amino acid transport protein [Pseudomonas aeruginosa]
Length = 552
Score = 32.0 bits (71), Expect = 4.6
Identities = 15/51 (29%), Positives = 25/51 (48%)
Frame = -3
Query: 321 FGSGSPTHISQSNASYGRFFYGAKNAYYSINFVQYLYNIIILLGQSDLFLV 169
FG+ HI + G K+ Y+ F+ Y +N+I LLG + + +V
Sbjct: 272 FGTAGLPHILMRFFTVGDAREARKSVLYATGFIGYFFNVIFLLGLASIVIV 322
>ref|NP_598239.1| colony stimulating factor 2 receptor, beta 1, low-affinity
(granulocyte-macrophage); interleukin 3 common beta
chain [Rattus norvegicus] gi|2118669|pir||I56563
interleukin-3 receptor beta-subunit - rat
gi|1086955|gb|AAB35068.1| interleukin-3 receptor
beta-subunit; rIL-3R beta [Rattus sp.]
gi|2288923|emb|CAA04186.1| interleukin-3 receptor
beta-subunit [Rattus norvegicus]
Length = 896
Score = 31.6 bits (70), Expect = 6.0
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 10/45 (22%)
Frame = -2
Query: 292 PVQCELRKILLWSQ----------KCILFYQFCSVSVQYYYIVRP 188
P+ CEL + L+WS+ +C+L Y SVS + YY ++P
Sbjct: 74 PMSCELSEDLMWSECPSSHRCVPRRCVLPYTQFSVSKEDYYSLQP 118
>gb|AAM00866.1|AF486554_2 RloD [Campylobacter jejuni]
Length = 1014
Score = 31.2 bits (69), Expect = 7.9
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = -2
Query: 334 PESFFWVRFSNTHFPVQCELRKILLW---SQKCILFYQFCSVSVQYYYIV 194
P FF F+N FP++ E RK L+W +Q C LF+ S+ + Y ++
Sbjct: 694 PLEFFREVFNNITFPIEQE-RKKLIWQFNNQNCYLFHLKNSLGLDYIELI 742
>gb|AAM00856.1|AF486552_2 RloD [Campylobacter jejuni] gi|19881272|gb|AAM00876.1|AF486556_2
RloD [Campylobacter jejuni]
Length = 1014
Score = 31.2 bits (69), Expect = 7.9
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = -2
Query: 334 PESFFWVRFSNTHFPVQCELRKILLW---SQKCILFYQFCSVSVQYYYIV 194
P FF F+N FP++ E RK L+W +Q C LF+ S+ + Y ++
Sbjct: 694 PLEFFREVFNNITFPIEQE-RKKLIWQFNNQNCYLFHLKNSLGLDYIELI 742
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 423,645,146
Number of Sequences: 1393205
Number of extensions: 8677142
Number of successful extensions: 18406
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 17975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18396
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
