Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000522A_C01 KMC000522A_c01
(561 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564962.1| expressed protein; protein id: At1g69360.1, sup... 52 5e-06
gb|AAL24136.1| unknown protein [Arabidopsis thaliana] 52 5e-06
gb|AAG52500.1|AC018364_18 unknown protein; 21446-24388 [Arabidop... 52 5e-06
ref|NP_173984.1| hypothetical protein; protein id: At1g26620.1 [... 46 3e-04
pir||E86272 F7A19.3 protein - Arabidopsis thaliana gi|5080770|gb... 44 0.001
>ref|NP_564962.1| expressed protein; protein id: At1g69360.1, supported by cDNA:
gi_16604686 [Arabidopsis thaliana]
Length = 896
Score = 52.0 bits (123), Expect = 5e-06
Identities = 28/56 (50%), Positives = 37/56 (66%)
Frame = -3
Query: 559 KDFPSEILPSLASLSRHEVTEDLQMIGGLVGSAGTHSEAGSQRSAGRNALGKGRRR 392
+DF +ILP LASLSR EVTEDLQM GGL+ + G + +G R + +GR+R
Sbjct: 786 RDFQRDILPGLASLSRLEVTEDLQMFGGLMKATGYNWNSG----MARRSSNRGRKR 837
>gb|AAL24136.1| unknown protein [Arabidopsis thaliana]
Length = 896
Score = 52.0 bits (123), Expect = 5e-06
Identities = 28/56 (50%), Positives = 37/56 (66%)
Frame = -3
Query: 559 KDFPSEILPSLASLSRHEVTEDLQMIGGLVGSAGTHSEAGSQRSAGRNALGKGRRR 392
+DF +ILP LASLSR EVTEDLQM GGL+ + G + +G R + +GR+R
Sbjct: 786 RDFQRDILPGLASLSRLEVTEDLQMFGGLMKATGYNWNSG----MARRSSNRGRKR 837
>gb|AAG52500.1|AC018364_18 unknown protein; 21446-24388 [Arabidopsis thaliana]
gi|12597788|gb|AAG60100.1|AC073178_11 unknown protein
[Arabidopsis thaliana]
Length = 910
Score = 52.0 bits (123), Expect = 5e-06
Identities = 28/56 (50%), Positives = 37/56 (66%)
Frame = -3
Query: 559 KDFPSEILPSLASLSRHEVTEDLQMIGGLVGSAGTHSEAGSQRSAGRNALGKGRRR 392
+DF +ILP LASLSR EVTEDLQM GGL+ + G + +G R + +GR+R
Sbjct: 800 RDFQRDILPGLASLSRLEVTEDLQMFGGLMKATGYNWNSG----MARRSSNRGRKR 851
>ref|NP_173984.1| hypothetical protein; protein id: At1g26620.1 [Arabidopsis
thaliana] gi|25372917|pir||D86393 hypothetical protein
T1K7.1 - Arabidopsis thaliana
gi|9797740|gb|AAF98558.1|AC013427_1 Contains similarity
to a hypothetical protein F23O10.6 gi|7705087 from
Arabidopsis thaliana BAC F23O10 gb|AC018364
Length = 867
Score = 46.2 bits (108), Expect = 3e-04
Identities = 20/30 (66%), Positives = 25/30 (82%)
Frame = -3
Query: 559 KDFPSEILPSLASLSRHEVTEDLQMIGGLV 470
+DF + LP L+SLSRHEVTED+QM GGL+
Sbjct: 757 RDFQRDTLPGLSSLSRHEVTEDIQMFGGLM 786
>pir||E86272 F7A19.3 protein - Arabidopsis thaliana
gi|5080770|gb|AAD39280.1|AC007576_3 Hypothetical protein
[Arabidopsis thaliana]
Length = 990
Score = 43.9 bits (102), Expect = 0.001
Identities = 19/34 (55%), Positives = 25/34 (72%)
Frame = -3
Query: 559 KDFPSEILPSLASLSRHEVTEDLQMIGGLVGSAG 458
+DF +ILP L SLS+HEVTED+QM G + + G
Sbjct: 854 RDFQRDILPGLLSLSKHEVTEDIQMFDGFMRATG 887
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 473,953,395
Number of Sequences: 1393205
Number of extensions: 9892522
Number of successful extensions: 24846
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 23939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24841
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
