Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000520A_C01 KMC000520A_c01
(555 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_132556.2| similar to cAMP response element-binding protei... 37 0.21
gb|AAH29022.1| Unknown (protein for MGC:32277) [Mus musculus] 37 0.21
ref|NP_766316.1| RIKEN cDNA D430026C09; hypothetical protein D43... 37 0.21
gb|AAO51412.1| similar to Dictyostelium discoideum (Slime mold).... 36 0.28
pir||I78877 cAMP responsive element binding protein - human gi|1... 36 0.36
>ref|XP_132556.2| similar to cAMP response element-binding protein CRE-BPa [Mus
musculus]
Length = 334
Score = 36.6 bits (83), Expect = 0.21
Identities = 28/96 (29%), Positives = 37/96 (38%)
Frame = +3
Query: 198 SKQVNDNHSLKCKHTKTRAKSSSKSHRAVNSLSQSKMIQNMKSYLKKEPNKTPPLSKEAT 377
S QV HS K R K++ H A S I +M + ++TP +
Sbjct: 48 SPQVQPMHS----EAKMRLKAALTHHPAAMSNGNMSTIGHMMEMMGSRQDQTPHHHLHSH 103
Query: 378 PRGGKR*WQREPHPHDHQQGDQTPHPNAQQLTHQIN 485
P + P+PH HQ PHP Q HQ N
Sbjct: 104 PHQHQTLPPHHPYPHQHQHPAHHPHP---QPHHQQN 136
>gb|AAH29022.1| Unknown (protein for MGC:32277) [Mus musculus]
Length = 334
Score = 36.6 bits (83), Expect = 0.21
Identities = 28/96 (29%), Positives = 37/96 (38%)
Frame = +3
Query: 198 SKQVNDNHSLKCKHTKTRAKSSSKSHRAVNSLSQSKMIQNMKSYLKKEPNKTPPLSKEAT 377
S QV HS K R K++ H A S I +M + ++TP +
Sbjct: 48 SPQVQPMHS----EAKMRLKAALTHHPAAMSNGNMSTIGHMMEMMGSRQDQTPHHHLHSH 103
Query: 378 PRGGKR*WQREPHPHDHQQGDQTPHPNAQQLTHQIN 485
P + P+PH HQ PHP Q HQ N
Sbjct: 104 PHQHQTLPPHHPYPHQHQHPAHHPHP---QPHHQQN 136
>ref|NP_766316.1| RIKEN cDNA D430026C09; hypothetical protein D430026C09 [Mus
musculus] gi|26342683|dbj|BAC34998.1| unnamed protein
product [Mus musculus]
Length = 357
Score = 36.6 bits (83), Expect = 0.21
Identities = 28/96 (29%), Positives = 37/96 (38%)
Frame = +3
Query: 198 SKQVNDNHSLKCKHTKTRAKSSSKSHRAVNSLSQSKMIQNMKSYLKKEPNKTPPLSKEAT 377
S QV HS K R K++ H A S I +M + ++TP +
Sbjct: 71 SPQVQPMHS----EAKMRLKAALTHHPAAMSNGNMSTIGHMMEMMGSRQDQTPHHHLHSH 126
Query: 378 PRGGKR*WQREPHPHDHQQGDQTPHPNAQQLTHQIN 485
P + P+PH HQ PHP Q HQ N
Sbjct: 127 PHQHQTLPPHHPYPHQHQHPAHHPHP---QPHHQQN 159
>gb|AAO51412.1| similar to Dictyostelium discoideum (Slime mold). Prespore-specific
protein (Fragment)
Length = 2273
Score = 36.2 bits (82), Expect = 0.28
Identities = 28/106 (26%), Positives = 43/106 (40%)
Frame = +3
Query: 168 KQKRVQ*NQNSKQVNDNHSLKCKHTKTRAKSSSKSHRAVNSLSQSKMIQNMKSYLKKEPN 347
+Q++ Q N K + N S + K +S+ S + + + M+ ++ SY K + N
Sbjct: 2108 QQQQQQGGSNLKITDLNASTTTSNIKKNNESAFLSSKT--NQNSGGMLSSVFSYFKGQQN 2165
Query: 348 KTPPLSKEATPRGGKR*WQREPHPHDHQQGDQTPHPNAQQLTHQIN 485
TP P PH HQQ Q QQ+ QIN
Sbjct: 2166 NTPSAQVSQIPINSTPYSTNYATPHQHQQLLQQQQQRQQQIQQQIN 2211
>pir||I78877 cAMP responsive element binding protein - human
gi|181054|gb|AAC37527.1| cAMP responsive element binding
protein
Length = 369
Score = 35.8 bits (81), Expect = 0.36
Identities = 27/96 (28%), Positives = 37/96 (38%)
Frame = +3
Query: 198 SKQVNDNHSLKCKHTKTRAKSSSKSHRAVNSLSQSKMIQNMKSYLKKEPNKTPPLSKEAT 377
S QV HS K R K++ H A S + +M + ++TP +
Sbjct: 83 SPQVQPMHS----EAKMRLKAALTHHPAAMSNGNMNTMGHMMEMMGSRQDQTPHHHMHSH 138
Query: 378 PRGGKR*WQREPHPHDHQQGDQTPHPNAQQLTHQIN 485
P + P+PH HQ PHP Q HQ N
Sbjct: 139 PHQHQTLPPHHPYPHQHQHPAHHPHP---QPHHQQN 171
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 483,617,174
Number of Sequences: 1393205
Number of extensions: 10591082
Number of successful extensions: 33749
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 31102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33453
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
