Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000516A_C02 KMC000516A_c02
(565 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176899.1| calmodulin-binding protein; protein id: At1g673... 103 1e-21
gb|AAG00250.1|AC002130_15 F1N21.13 [Arabidopsis thaliana] 103 1e-21
dbj|BAB90826.1| anther ethylene-upregulated protein-like [Oryza ... 80 2e-14
ref|NP_179817.2| ethylene-induced calmodulin-binding protein, pu... 59 5e-08
gb|AAG37879.1| calmodulin-binding protein [Arabidopsis thaliana] 59 5e-08
>ref|NP_176899.1| calmodulin-binding protein; protein id: At1g67310.1 [Arabidopsis
thaliana]
Length = 1035
Score = 103 bits (258), Expect = 1e-21
Identities = 58/99 (58%), Positives = 73/99 (73%), Gaps = 3/99 (3%)
Frame = -3
Query: 563 RKGIGLRGFRPEMETNENEDEDEDEDILKIFRKQKVDVEIEEAVSRVLSMVDSPDARQQY 384
RKG+GLRGFR ++E+ E + EDEDILK+FRKQKVDV + EA SRVLSM +SP+ARQQY
Sbjct: 936 RKGVGLRGFRQDVESTE---DSEDEDILKVFRKQKVDVAVNEAFSRVLSMSNSPEARQQY 992
Query: 383 HRMLEKYRQAKAELAGTSEETSL---STSLGDVYNMEDD 276
HR+L++Y Q KAEL T ET + L D+ +ME D
Sbjct: 993 HRVLKRYCQTKAELGKT--ETLVGEDDDGLFDIADMEYD 1029
>gb|AAG00250.1|AC002130_15 F1N21.13 [Arabidopsis thaliana]
Length = 1016
Score = 103 bits (258), Expect = 1e-21
Identities = 58/99 (58%), Positives = 73/99 (73%), Gaps = 3/99 (3%)
Frame = -3
Query: 563 RKGIGLRGFRPEMETNENEDEDEDEDILKIFRKQKVDVEIEEAVSRVLSMVDSPDARQQY 384
RKG+GLRGFR ++E+ E + EDEDILK+FRKQKVDV + EA SRVLSM +SP+ARQQY
Sbjct: 917 RKGVGLRGFRQDVESTE---DSEDEDILKVFRKQKVDVAVNEAFSRVLSMSNSPEARQQY 973
Query: 383 HRMLEKYRQAKAELAGTSEETSL---STSLGDVYNMEDD 276
HR+L++Y Q KAEL T ET + L D+ +ME D
Sbjct: 974 HRVLKRYCQTKAELGKT--ETLVGEDDDGLFDIADMEYD 1010
>dbj|BAB90826.1| anther ethylene-upregulated protein-like [Oryza sativa (japonica
cultivar-group)]
Length = 568
Score = 79.7 bits (195), Expect = 2e-14
Identities = 39/71 (54%), Positives = 53/71 (73%)
Frame = -3
Query: 563 RKGIGLRGFRPEMETNENEDEDEDEDILKIFRKQKVDVEIEEAVSRVLSMVDSPDARQQY 384
RKG+GLRGF P ++EDED D+ K+FRKQ+V+ + +AVSRV S++DSP ARQQY
Sbjct: 494 RKGVGLRGFHPGAIAMPIDEEDED-DVAKVFRKQRVETALNKAVSRVSSIIDSPVARQQY 552
Query: 383 HRMLEKYRQAK 351
RML+ ++Q K
Sbjct: 553 RRMLKMHKQNK 563
>ref|NP_179817.2| ethylene-induced calmodulin-binding protein, putative; protein id:
At2g22300.1 [Arabidopsis thaliana]
Length = 974
Score = 58.5 bits (140), Expect = 5e-08
Identities = 37/100 (37%), Positives = 58/100 (58%), Gaps = 6/100 (6%)
Frame = -3
Query: 563 RKGIGLRGFRPEMETNENED---EDEDEDILKIFRKQKVDVEIEEAVSRVLSMVDSPDAR 393
RKG GLRGF+ E + +D ++ED+D K RKQ D +++A++RV SMV P+AR
Sbjct: 856 RKGAGLRGFKSEALVEKMQDGTEKEEDDDFFKQGRKQTED-RLQKALARVKSMVQYPEAR 914
Query: 392 QQYHRML---EKYRQAKAELAGTSEETSLSTSLGDVYNME 282
QY R+L +++K E A + E + D+ ++E
Sbjct: 915 DQYRRLLNVVNDIQESKVEKALENSEATCFDDDDDLIDIE 954
>gb|AAG37879.1| calmodulin-binding protein [Arabidopsis thaliana]
Length = 457
Score = 58.5 bits (140), Expect = 5e-08
Identities = 37/100 (37%), Positives = 58/100 (58%), Gaps = 6/100 (6%)
Frame = -3
Query: 563 RKGIGLRGFRPEMETNENED---EDEDEDILKIFRKQKVDVEIEEAVSRVLSMVDSPDAR 393
RKG GLRGF+ E + +D ++ED+D K RKQ D +++A++RV SMV P+AR
Sbjct: 339 RKGAGLRGFKSEALVEKMQDGTEKEEDDDFFKQGRKQTED-RLQKALARVKSMVQYPEAR 397
Query: 392 QQYHRML---EKYRQAKAELAGTSEETSLSTSLGDVYNME 282
QY R+L +++K E A + E + D+ ++E
Sbjct: 398 DQYRRLLNVVNDIQESKVEKALENSEATCFDDDDDLIDIE 437
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 446,820,760
Number of Sequences: 1393205
Number of extensions: 8976861
Number of successful extensions: 44556
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 32574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41018
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
