Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000514A_C01 KMC000514A_c01
(646 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_182326.1| hypothetical protein; protein id: At2g48050.1 [... 35 0.66
ref|NP_456407.1| putative membrane protein [Salmonella enterica ... 35 0.86
gb|EAA22381.1| hypothetical protein [Plasmodium yoelii yoelii] 32 7.3
ref|ZP_00117303.1| hypothetical protein [Cytophaga hutchinsonii] 32 7.3
ref|NP_084759.1| Ycf1 protein [Oenothera elata subsp. hookeri] g... 32 9.5
>ref|NP_182326.1| hypothetical protein; protein id: At2g48050.1 [Arabidopsis thaliana]
gi|25409089|pir||G84922 hypothetical protein At2g48050
[imported] - Arabidopsis thaliana
gi|4249412|gb|AAD13709.1| hypothetical protein
[Arabidopsis thaliana]
Length = 1500
Score = 35.4 bits (80), Expect = 0.66
Identities = 31/126 (24%), Positives = 59/126 (46%), Gaps = 5/126 (3%)
Frame = -1
Query: 460 HSQTREHQKMAMDIVKSIKLNAKKRKLTPSEQ-TSVEDGNKMRNIGFE-GRGNKH*LAGV 287
+S T E + ++ ++ ++KRK TP E+ TS++ F+ GR +H + +
Sbjct: 934 NSDTNEQSSVDDEVYD--EMESQKRKHTPFERSTSLQSDRSSDGTSFQIGRIFRHIWSRM 991
Query: 286 CCNFDMLSCCCHQKMLLWYYCIWQSL*FLALFLSS---NLFMLPSFQVAAIMLMELFFRP 116
N D++ CC LW + + + ALFL + + F V +M E++
Sbjct: 992 QSNNDIVCYCCFIIAFLWNFSLLSMVYLAALFLYALCVHTGPTHIFWVIMLMYTEIYILL 1051
Query: 115 EVLWQL 98
+ L+Q+
Sbjct: 1052 QYLYQI 1057
>ref|NP_456407.1| putative membrane protein [Salmonella enterica subsp. enterica
serovar Typhi] gi|25380634|pir||AD0736 probable membrane
protein STY2047 [imported] - Salmonella enterica subsp.
enterica serovar Typhi (strain CT18)
gi|16503087|emb|CAD05590.1| putative membrane protein
[Salmonella enterica subsp. enterica serovar Typhi]
Length = 189
Score = 35.0 bits (79), Expect = 0.86
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = -1
Query: 388 RKLTPSEQTSVEDGNKMRNIGFEGRGNKH*LAGVCCNFDMLSCCCHQKMLLWYYC 224
R++ S +T+VE+G K+ NI G G+ L NFD L+ LLW +C
Sbjct: 29 REIHLSNKTNVENGYKLLNIQIVGIGSSFLLLTQKTNFDFLTAGITTFTLLWTWC 83
>gb|EAA22381.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 2475
Score = 32.0 bits (71), Expect = 7.3
Identities = 24/93 (25%), Positives = 44/93 (46%), Gaps = 9/93 (9%)
Frame = -1
Query: 556 SSFDNLRRRKAPSMGCARLCKVD--------CETVEGLDLHSQTREHQKMAMDIVKSIKL 401
S+ N++R K+ +R ++ CE E + HS EH+ M+ SI+
Sbjct: 1561 SNRSNMQRNKSKEKTISREMNINANYIIEGNCEKNEN-NFHSDNEEHKIGTMN---SIRT 1616
Query: 400 NAKKRKLTPSEQTSV-EDGNKMRNIGFEGRGNK 305
N +K + ++ + +D N +RN+G + NK
Sbjct: 1617 NKQKNENDNEKKLEIFQDNNSLRNLGEQAASNK 1649
>ref|ZP_00117303.1| hypothetical protein [Cytophaga hutchinsonii]
Length = 228
Score = 32.0 bits (71), Expect = 7.3
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 199 QGIIRIAKCNNTIATSFDDNSMRAYQNYSKPQLINAYFHDPQ-NQYSASCFH 351
+G+I +AK N T T D N M A + K +INA DP N Y+A F+
Sbjct: 106 KGVIYVAKWNGTNWTELDGNLMNAVR---KVVIINAVVADPSGNVYAAGYFN 154
>ref|NP_084759.1| Ycf1 protein [Oenothera elata subsp. hookeri]
gi|23822375|sp|Q9MTH5|YCF1_OENHO Hypothetical 287.9 kDa
protein ycf1 gi|13276714|emb|CAB67227.2| Ycf1 protein
[Oenothera elata subsp. hookeri]
Length = 2434
Score = 31.6 bits (70), Expect = 9.5
Identities = 20/59 (33%), Positives = 27/59 (44%), Gaps = 7/59 (11%)
Frame = +3
Query: 57 SYKVWISNSKANK-------LNCHSTSGLKNNSINMIAAT*KDGSMNKFELRKRARNYK 212
SY+ WIS +K K N T K + +N++A + N E RKR NYK
Sbjct: 603 SYRQWISRNKKKKNSLSTEFQNRIQTLDQKKSLLNVLARRKRSSLQNVLETRKRLCNYK 661
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 528,527,924
Number of Sequences: 1393205
Number of extensions: 11053444
Number of successful extensions: 26934
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 25976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26931
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27291941472
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
