Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000493A_C01 KMC000493A_c01
(528 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK83642.1| AT5g66560/K1F13_23 [Arabidopsis thaliana] gi|2411... 106 2e-22
ref|NP_201457.1| photoreceptor-interacting protein-like; protein... 106 2e-22
dbj|BAB10932.1| photoreceptor-interacting protein-like [Arabidop... 105 3e-22
ref|NP_190653.2| putative protein; protein id: At3g50840.1, supp... 102 2e-21
pir||T08405 hypothetical protein F18B3.120 - Arabidopsis thalian... 102 2e-21
>gb|AAK83642.1| AT5g66560/K1F13_23 [Arabidopsis thaliana]
gi|24111403|gb|AAN46836.1| At5g66560/K1F13_23
[Arabidopsis thaliana]
Length = 668
Score = 106 bits (264), Expect = 2e-22
Identities = 60/110 (54%), Positives = 71/110 (64%), Gaps = 7/110 (6%)
Frame = -2
Query: 509 EEEGREVLQLRLGTEHVQEGNGTWRGTVRENQVLRLDMDSMRTRVHQLERECSSMKRVIA 330
EE+G E R Q G W+ TVRENQVLRLDMD+MRTRVH+LERECS+MK+VIA
Sbjct: 566 EEDGDEAEGER------QVDAGKWKKTVRENQVLRLDMDTMRTRVHRLERECSNMKKVIA 619
Query: 329 KIDNSAVDGG-------GWRASLGRKFSCKFKTQVCDSQQSTVVDKRKGR 201
KID W S+ +KF CKFKTQVCDS ++T+VD R R
Sbjct: 620 KIDKEGSSPATTTDRPRSW--SITKKFGCKFKTQVCDSHEATMVDHRSRR 667
>ref|NP_201457.1| photoreceptor-interacting protein-like; protein id: At5g66560.1,
supported by cDNA: gi_15146317 [Arabidopsis thaliana]
Length = 668
Score = 106 bits (264), Expect = 2e-22
Identities = 60/110 (54%), Positives = 71/110 (64%), Gaps = 7/110 (6%)
Frame = -2
Query: 509 EEEGREVLQLRLGTEHVQEGNGTWRGTVRENQVLRLDMDSMRTRVHQLERECSSMKRVIA 330
EE+G E R Q G W+ TVRENQVLRLDMD+MRTRVH+LERECS+MK+VIA
Sbjct: 566 EEDGDEAEGER------QVDAGKWKKTVRENQVLRLDMDTMRTRVHRLERECSNMKKVIA 619
Query: 329 KIDNSAVDGG-------GWRASLGRKFSCKFKTQVCDSQQSTVVDKRKGR 201
KID W S+ +KF CKFKTQVCDS ++T+VD R R
Sbjct: 620 KIDKEGSSPATTTDRPRSW--SITKKFGCKFKTQVCDSHEATMVDHRSRR 667
>dbj|BAB10932.1| photoreceptor-interacting protein-like [Arabidopsis thaliana]
Length = 597
Score = 105 bits (263), Expect = 3e-22
Identities = 54/89 (60%), Positives = 64/89 (71%), Gaps = 7/89 (7%)
Frame = -2
Query: 446 GTWRGTVRENQVLRLDMDSMRTRVHQLERECSSMKRVIAKIDNSAVDGG-------GWRA 288
G W+ TVRENQVLRLDMD+MRTRVH+LERECS+MK+VIAKID W
Sbjct: 510 GKWKKTVRENQVLRLDMDTMRTRVHRLERECSNMKKVIAKIDKEGSSPATTTDRPRSW-- 567
Query: 287 SLGRKFSCKFKTQVCDSQQSTVVDKRKGR 201
S+ +KF CKFKTQVCDS ++T+VD R R
Sbjct: 568 SITKKFGCKFKTQVCDSHEATMVDHRSRR 596
>ref|NP_190653.2| putative protein; protein id: At3g50840.1, supported by cDNA:
gi_20453202 [Arabidopsis thaliana]
Length = 569
Score = 102 bits (255), Expect = 2e-21
Identities = 49/85 (57%), Positives = 65/85 (75%), Gaps = 3/85 (3%)
Frame = -2
Query: 446 GTWRGTVRENQVLRLDMDSMRTRVHQLERECSSMKRVIAKIDNSAV---DGGGWRASLGR 276
G W+ V+ENQVLRLDMD+MRTRV+QLE+EC +K+VIAKID ++ G + S+G+
Sbjct: 482 GRWKEAVKENQVLRLDMDTMRTRVNQLEKECLYLKKVIAKIDKESLLKAKHGAGKWSIGK 541
Query: 275 KFSCKFKTQVCDSQQSTVVDKRKGR 201
KF CKF QVCDSQ++T+VD+R R
Sbjct: 542 KFGCKFSAQVCDSQEATMVDRRSRR 566
>pir||T08405 hypothetical protein F18B3.120 - Arabidopsis thaliana
gi|4835235|emb|CAB42913.1| putative protein [Arabidopsis
thaliana]
Length = 567
Score = 102 bits (255), Expect = 2e-21
Identities = 49/85 (57%), Positives = 65/85 (75%), Gaps = 3/85 (3%)
Frame = -2
Query: 446 GTWRGTVRENQVLRLDMDSMRTRVHQLERECSSMKRVIAKIDNSAV---DGGGWRASLGR 276
G W+ V+ENQVLRLDMD+MRTRV+QLE+EC +K+VIAKID ++ G + S+G+
Sbjct: 480 GRWKEAVKENQVLRLDMDTMRTRVNQLEKECLYLKKVIAKIDKESLLKAKHGAGKWSIGK 539
Query: 275 KFSCKFKTQVCDSQQSTVVDKRKGR 201
KF CKF QVCDSQ++T+VD+R R
Sbjct: 540 KFGCKFSAQVCDSQEATMVDRRSRR 564
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 480,261,602
Number of Sequences: 1393205
Number of extensions: 11243513
Number of successful extensions: 81816
Number of sequences better than 10.0: 944
Number of HSP's better than 10.0 without gapping: 62464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76907
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
