Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000489A_C01 KMC000489A_c01
(536 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM44081.1| type IIB calcium ATPase MCA5 [Medicago truncatula] 291 3e-78
gb|AAG28435.1|AF195028_1 plasma membrane Ca2+-ATPase [Glycine max] 271 3e-72
ref|NP_195479.1| calcium-transporting ATPase 2, plasma membrane-... 258 2e-68
ref|NP_564295.1| calcium-transporting ATPase 1, plasma membrane-... 245 3e-64
pir||S71168 Ca2+-transporting ATPase (EC 3.6.3.8) ACA1 precursor... 245 3e-64
>gb|AAM44081.1| type IIB calcium ATPase MCA5 [Medicago truncatula]
Length = 1014
Score = 291 bits (746), Expect = 3e-78
Identities = 141/172 (81%), Positives = 160/172 (92%)
Frame = +3
Query: 21 LNENFGGVKSKNSSQEALQRWRKLCGVVKNPKRRFRFTANLNKRTEAAAMRRSNQEKLRV 200
L ENFGGVKSKNSS+EAL+RWR +CG VKNPKRRFRFTANL+KR EAAAMRR+NQEKLRV
Sbjct: 5 LQENFGGVKSKNSSEEALRRWRDVCGFVKNPKRRFRFTANLDKRGEAAAMRRTNQEKLRV 64
Query: 201 AVLVSKAALQFIQGSQPSEYKVPEDVKAAGFQICGDELGSIVENHDVKKFKFHGGVNGVA 380
AVLVSKAA QFIQG++PS+YKVPE+VK AGFQICGDELGSIVE HDVKK K+HG ++G+A
Sbjct: 65 AVLVSKAAFQFIQGAKPSDYKVPEEVKDAGFQICGDELGSIVEGHDVKKLKYHGKIDGIA 124
Query: 381 KKLSTSVTEGISSDADILNRRQLIYGINKFTEIEAKSFWVFVWEALQDMTLM 536
+KLSTS TEGIS+DAD+L++RQ IYGINKFTE +AKSFWVFVWEALQDMTLM
Sbjct: 125 EKLSTSATEGISNDADLLDKRQQIYGINKFTESQAKSFWVFVWEALQDMTLM 176
>gb|AAG28435.1|AF195028_1 plasma membrane Ca2+-ATPase [Glycine max]
Length = 1014
Score = 271 bits (694), Expect = 3e-72
Identities = 134/172 (77%), Positives = 153/172 (88%)
Frame = +3
Query: 21 LNENFGGVKSKNSSQEALQRWRKLCGVVKNPKRRFRFTANLNKRTEAAAMRRSNQEKLRV 200
LNENF VKSKNS +E LQRWR+LCG+VKNP+RRFRFTANL+KR EAAAMRR+ QEKLR+
Sbjct: 5 LNENFE-VKSKNSPEEVLQRWRRLCGIVKNPRRRFRFTANLSKRDEAAAMRRTIQEKLRI 63
Query: 201 AVLVSKAALQFIQGSQPSEYKVPEDVKAAGFQICGDELGSIVENHDVKKFKFHGGVNGVA 380
A+LVSKAALQFIQ Q S+YK+PE+VK AGFQICGDELGSIVE HDVKKF+ HGGV+G+A
Sbjct: 64 AILVSKAALQFIQSVQLSDYKLPEEVKDAGFQICGDELGSIVEVHDVKKFRHHGGVDGIA 123
Query: 381 KKLSTSVTEGISSDADILNRRQLIYGINKFTEIEAKSFWVFVWEALQDMTLM 536
+KLSTS TEG++SD ++LNRRQ IYGINKFTE A SFWVFVWEA QDMTLM
Sbjct: 124 EKLSTSTTEGLNSDTELLNRRQQIYGINKFTESAATSFWVFVWEAFQDMTLM 175
>ref|NP_195479.1| calcium-transporting ATPase 2, plasma membrane-type (Ca2+-ATPase,
isoform 2); protein id: At4g37640.1, supported by cDNA:
gi_17064815, supported by cDNA: gi_3335059 [Arabidopsis
thaliana] gi|12229639|sp|O81108|ACA2_ARATH
Calcium-transporting ATPase 2, plasma membrane-type
(Ca2+-ATPase, isoform 2) gi|7436361|pir||T04721
Ca2+-transporting ATPase (EC 3.6.3.8) ACA2,
calmodulin-regulated [validated] - Arabidopsis thaliana
gi|3335060|gb|AAC26997.1| plasma membrane-type calcium
ATPase [Arabidopsis thaliana] gi|4468989|emb|CAB38303.1|
plasma membrane-type calcium ATPase (ACA2) [Arabidopsis
thaliana] gi|7270746|emb|CAB80429.1| plasma
membrane-type calcium ATPase (ACA2) [Arabidopsis
thaliana] gi|17064816|gb|AAL32562.1| plasma
membrane-type calcium ATPase (ACA2) [Arabidopsis
thaliana]
Length = 1014
Score = 258 bits (660), Expect = 2e-68
Identities = 127/172 (73%), Positives = 149/172 (85%)
Frame = +3
Query: 21 LNENFGGVKSKNSSQEALQRWRKLCGVVKNPKRRFRFTANLNKRTEAAAMRRSNQEKLRV 200
LNENF VK+K+SS+E L++WR LCGVVKNPKRRFRFTANL+KR EAAAMRR+NQEKLR+
Sbjct: 5 LNENFD-VKAKHSSEEVLEKWRNLCGVVKNPKRRFRFTANLSKRYEAAAMRRTNQEKLRI 63
Query: 201 AVLVSKAALQFIQGSQPSEYKVPEDVKAAGFQICGDELGSIVENHDVKKFKFHGGVNGVA 380
AVLVSKAA QFI G PS+Y VPEDVKAAGF+IC DELGSIVE+HDVKK KFHGGV+G+A
Sbjct: 64 AVLVSKAAFQFISGVSPSDYTVPEDVKAAGFEICADELGSIVESHDVKKLKFHGGVDGLA 123
Query: 381 KKLSTSVTEGISSDADILNRRQLIYGINKFTEIEAKSFWVFVWEALQDMTLM 536
KL S T+G+S++A L++RQ ++GINKF E E + FWVFVWEALQDMTLM
Sbjct: 124 GKLKASPTDGLSTEAAQLSQRQELFGINKFAESEMRGFWVFVWEALQDMTLM 175
>ref|NP_564295.1| calcium-transporting ATPase 1, plasma membrane-type (Ca2+-ATPase,
isoform 1); protein id: At1g27770.2, supported by cDNA:
gi_493621 [Arabidopsis thaliana]
Length = 946
Score = 245 bits (625), Expect = 3e-64
Identities = 121/173 (69%), Positives = 143/173 (81%), Gaps = 1/173 (0%)
Frame = +3
Query: 21 LNENFGGVKSKNSSQEALQRWRKLCGVVKNPKRRFRFTANLNKRTEAAAMRRSNQEKLRV 200
LNENFG VK KNSS EALQRWRKLC +VKNPKRRFRFTANL+KR+EA A+RRSNQEK RV
Sbjct: 5 LNENFGDVKPKNSSDEALQRWRKLCWIVKNPKRRFRFTANLSKRSEAEAIRRSNQEKFRV 64
Query: 201 AVLVSKAALQFIQGSQ-PSEYKVPEDVKAAGFQICGDELGSIVENHDVKKFKFHGGVNGV 377
AVLVS+AALQFI + SEY +PE+V+ AGF+IC DELGSIVE HD+KK K HGG G+
Sbjct: 65 AVLVSQAALQFINSLKLSSEYTLPEEVRKAGFEICPDELGSIVEGHDLKKLKIHGGTEGL 124
Query: 378 AKKLSTSVTEGISSDADILNRRQLIYGINKFTEIEAKSFWVFVWEALQDMTLM 536
+KLSTS+ GIS+ D+L+ R+ IYGIN+FTE ++ FW+FVWEALQD TLM
Sbjct: 125 TEKLSTSIASGISTSEDLLSVRKEIYGINQFTESPSRGFWLFVWEALQDTTLM 177
>pir||S71168 Ca2+-transporting ATPase (EC 3.6.3.8) ACA1 precursor - Arabidopsis
thaliana gi|471089|dbj|BAA03091.1| chloroplast envelope
Ca2+-ATPase precursor [Arabidopsis thaliana]
gi|4165448|emb|CAA49558.1| envelope Ca2+-ATPase
[Arabidopsis thaliana]
Length = 946
Score = 245 bits (625), Expect = 3e-64
Identities = 121/173 (69%), Positives = 143/173 (81%), Gaps = 1/173 (0%)
Frame = +3
Query: 21 LNENFGGVKSKNSSQEALQRWRKLCGVVKNPKRRFRFTANLNKRTEAAAMRRSNQEKLRV 200
LNENFG VK KNSS EALQRWRKLC +VKNPKRRFRFTANL+KR+EA A+RRSNQEK RV
Sbjct: 5 LNENFGDVKPKNSSDEALQRWRKLCWIVKNPKRRFRFTANLSKRSEAEAIRRSNQEKFRV 64
Query: 201 AVLVSKAALQFIQGSQ-PSEYKVPEDVKAAGFQICGDELGSIVENHDVKKFKFHGGVNGV 377
AVLVS+AALQFI + SEY +PE+V+ AGF+IC DELGSIVE HD+KK K HGG G+
Sbjct: 65 AVLVSQAALQFINSLKLSSEYTLPEEVRKAGFEICPDELGSIVEGHDLKKLKIHGGTEGL 124
Query: 378 AKKLSTSVTEGISSDADILNRRQLIYGINKFTEIEAKSFWVFVWEALQDMTLM 536
+KLSTS+ GIS+ D+L+ R+ IYGIN+FTE ++ FW+FVWEALQD TLM
Sbjct: 125 TEKLSTSIASGISTSEDLLSVRKEIYGINQFTESPSRGFWLFVWEALQDTTLM 177
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 453,337,374
Number of Sequences: 1393205
Number of extensions: 9561026
Number of successful extensions: 28026
Number of sequences better than 10.0: 103
Number of HSP's better than 10.0 without gapping: 27197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27958
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
