Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000484A_C01 KMC000484A_c01
(910 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189106.1| hypothetical protein; protein id: At3g24630.1 [... 99 1e-19
ref|NP_199085.1| unknown protein; protein id: At5g42710.1 [Arabi... 41 0.028
ref|NP_508149.1| Microtubule-interacting protein that associates... 39 0.083
gb|AAN65013.1| putative glutamic acid-rich protein [Oryza sativa... 39 0.083
dbj|BAB78683.1| P0452F10.20 [Oryza sativa (japonica cultivar-gro... 39 0.083
>ref|NP_189106.1| hypothetical protein; protein id: At3g24630.1 [Arabidopsis
thaliana] gi|9279792|dbj|BAB01213.1|
gene_id:MSD24.1~unknown protein [Arabidopsis thaliana]
Length = 724
Score = 98.6 bits (244), Expect = 1e-19
Identities = 59/134 (44%), Positives = 78/134 (58%), Gaps = 2/134 (1%)
Frame = +2
Query: 503 SVMYKPFVTCDDPKGVVECGSIRKYRSSSHSSHKMKDKTKSRRTVENLETTSLSNKAGRE 682
S +Y+ F+ CDDP+ VVECG+I+K S SS K + + + E E K+
Sbjct: 8 SGVYRSFIMCDDPRDVVECGAIKKQSKSRSSSTKQRCEEHLSKVKERSEMAVAPRKS--- 64
Query: 683 GKVSKGSAERSFDPSSLQLVEVSRGAQRLENMIESWSGSLRYEGNS--EDMAKDLLKGAL 856
S+ PSSLQL+ VS+G Q+L IES S +E S ED+AKDLL+GAL
Sbjct: 65 ------SSTEDVPPSSLQLLRVSKGIQKLNVAIESLSKGFSFEAVSRPEDIAKDLLRGAL 118
Query: 857 DLQESLAMLRKVQE 898
DL+ESLAML +QE
Sbjct: 119 DLEESLAMLSSIQE 132
>ref|NP_199085.1| unknown protein; protein id: At5g42710.1 [Arabidopsis thaliana]
gi|10177274|dbj|BAB10627.1| gene_id:MJB21.8~unknown
protein [Arabidopsis thaliana]
Length = 807
Score = 40.8 bits (94), Expect = 0.028
Identities = 20/61 (32%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Frame = +2
Query: 731 LQLVEVSRGAQRLENMIESWSGSLRYEGN--SEDMAKDLLKGALDLQESLAMLRKVQEAS 904
+ + E+S+GAQ+L +I + S L + S + L++GA++L++SL +L +Q+AS
Sbjct: 148 VHIKEISKGAQKLNQIINACSNGLSFRKGRYSIQCGEQLMEGAIELEQSLRLLVDIQQAS 207
Query: 905 Q 907
+
Sbjct: 208 E 208
>ref|NP_508149.1| Microtubule-interacting protein that associates with TRAF3 like
[Caenorhabditis elegans] gi|7495222|pir||T37189
hypothetical protein C02H7.1 - Caenorhabditis elegans
gi|1208822|gb|AAC47924.1| Hypothetical protein C02H7.1
[Caenorhabditis elegans]
Length = 535
Score = 39.3 bits (90), Expect = 0.083
Identities = 24/72 (33%), Positives = 38/72 (52%)
Frame = +2
Query: 515 KPFVTCDDPKGVVECGSIRKYRSSSHSSHKMKDKTKSRRTVENLETTSLSNKAGREGKVS 694
K V +D KG E S K RSS +H+ K+K++ +++ E E S+ + K S
Sbjct: 124 KKKVKKEDKKGDEEEKSTTKKRSSKKETHEEKEKSEKKKSAEEKEKKKKSSSSKERHKSS 183
Query: 695 KGSAERSFDPSS 730
S+E+S + SS
Sbjct: 184 DRSSEKSSEKSS 195
>gb|AAN65013.1| putative glutamic acid-rich protein [Oryza sativa (japonica
cultivar-group)]
Length = 943
Score = 39.3 bits (90), Expect = 0.083
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 9/103 (8%)
Frame = +2
Query: 623 SRRTVENLETTSLSNKAGREGKVSKGSAERSFDPSSL-----QLVEVSRGAQRLEN--MI 781
+R ++N+E S R G + + + S L + +V+ G ++L + M+
Sbjct: 136 NRGKLQNIELVS------RNGSIFFRDTDHAMPESHLVSPSAHVGKVAIGVKKLNDILMV 189
Query: 782 ESWSGSLRYEG--NSEDMAKDLLKGALDLQESLAMLRKVQEAS 904
S G R G +S D+ ++L GA+DL+ESL+ML +QEAS
Sbjct: 190 YSSGGGARDTGRRSSVDIGRELFGGAMDLEESLSMLVMLQEAS 232
>dbj|BAB78683.1| P0452F10.20 [Oryza sativa (japonica cultivar-group)]
Length = 775
Score = 39.3 bits (90), Expect = 0.083
Identities = 27/73 (36%), Positives = 37/73 (49%)
Frame = +2
Query: 689 VSKGSAERSFDPSSLQLVEVSRGAQRLENMIESWSGSLRYEGNSEDMAKDLLKGALDLQE 868
V +G R + PS ++S Q+ M S S A+DLL+GA+DLQ+
Sbjct: 133 VCRGCQGRDWSPSQSNREDMSMMLQKDYLMASSLS---------RRFAEDLLRGAMDLQD 183
Query: 869 SLAMLRKVQEASQ 907
SL ML K Q AS+
Sbjct: 184 SLTMLEKFQTASR 196
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 776,565,775
Number of Sequences: 1393205
Number of extensions: 16991659
Number of successful extensions: 44753
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 42670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44707
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 49641180728
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
