Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000456A_C01 KMC000456A_c01
(601 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB40709.1| BY-2 kinesin-like protein 5 [Nicotiana tabacum] 82 5e-15
ref|NP_198147.1| kinesin-related protein; protein id: At5g27950.... 80 2e-14
gb|AAL58950.1|AF462865_1 AT5g27950/F15F15_20 [Arabidopsis thalia... 80 2e-14
gb|AAM63808.1| unknown [Arabidopsis thaliana] 80 2e-14
ref|NP_603039.1| Hemolysin [Fusobacterium nucleatum subsp. nucle... 33 3.7
>dbj|BAB40709.1| BY-2 kinesin-like protein 5 [Nicotiana tabacum]
Length = 633
Score = 82.0 bits (201), Expect = 5e-15
Identities = 51/99 (51%), Positives = 68/99 (68%), Gaps = 3/99 (3%)
Frame = -3
Query: 599 ELIVKSKGLRSVVARSSIQFPCSRSLSYSDLRVKAMLRSSHGKSRYAETNTIPTERPKCN 420
E+ + K LRS ARSS Q S+S S+SD R KA LR+S+ +SRY+ETNTI + KC+
Sbjct: 537 EIHSRPKSLRSW-ARSSTQLSGSQSNSFSDRRFKAQLRTSNKRSRYSETNTIAGD-IKCD 594
Query: 419 ELDSK---VVTPRSQMVTSSDPNLRVTLCHHRRRMSNLI 312
+ D K + P+S+ + SSDP RVTL HHRRRMS+L+
Sbjct: 595 DSDIKPSVLPQPQSKTIASSDPKPRVTLPHHRRRMSDLL 633
>ref|NP_198147.1| kinesin-related protein; protein id: At5g27950.1 [Arabidopsis
thaliana]
Length = 640
Score = 80.1 bits (196), Expect = 2e-14
Identities = 49/104 (47%), Positives = 67/104 (64%), Gaps = 9/104 (8%)
Frame = -3
Query: 599 ELIVKSKGLRSVVARSSIQFPCSRSLSYSDLRVKAMLRSSHGKSRYAETNT-IPTERPKC 423
E+ K++ +RSV A++ QF S+SLS SD R KA+LR S+ K A N+ P E PK
Sbjct: 537 EINAKAQSIRSV-AKNLTQFSTSQSLSLSDSRSKALLRRSYTKPLQAAANSGTPPETPKR 595
Query: 422 NELDSKVV--------TPRSQMVTSSDPNLRVTLCHHRRRMSNL 315
+ D+ + +PRS+MVTSSDPN+R LCHH+RRMS+L
Sbjct: 596 HIKDNSLQRKNMNDTSSPRSKMVTSSDPNVRAKLCHHKRRMSSL 639
>gb|AAL58950.1|AF462865_1 AT5g27950/F15F15_20 [Arabidopsis thaliana]
gi|27363228|gb|AAO11533.1| At5g27950/F15F15_20
[Arabidopsis thaliana]
Length = 625
Score = 80.1 bits (196), Expect = 2e-14
Identities = 49/104 (47%), Positives = 67/104 (64%), Gaps = 9/104 (8%)
Frame = -3
Query: 599 ELIVKSKGLRSVVARSSIQFPCSRSLSYSDLRVKAMLRSSHGKSRYAETNT-IPTERPKC 423
E+ K++ +RSV A++ QF S+SLS SD R KA+LR S+ K A N+ P E PK
Sbjct: 522 EINAKAQSIRSV-AKNLTQFSTSQSLSLSDSRSKALLRRSYTKPLQAAANSGTPPETPKR 580
Query: 422 NELDSKVV--------TPRSQMVTSSDPNLRVTLCHHRRRMSNL 315
+ D+ + +PRS+MVTSSDPN+R LCHH+RRMS+L
Sbjct: 581 HIKDNSLQRKNMNDTSSPRSKMVTSSDPNVRAKLCHHKRRMSSL 624
>gb|AAM63808.1| unknown [Arabidopsis thaliana]
Length = 197
Score = 80.1 bits (196), Expect = 2e-14
Identities = 49/104 (47%), Positives = 67/104 (64%), Gaps = 9/104 (8%)
Frame = -3
Query: 599 ELIVKSKGLRSVVARSSIQFPCSRSLSYSDLRVKAMLRSSHGKSRYAETNT-IPTERPKC 423
E+ K++ +RSV A++ QF S+SLS SD R KA+LR S+ K A N+ P E PK
Sbjct: 94 EINAKAQSIRSV-AKNLTQFSTSQSLSLSDSRSKALLRRSYTKPLQAAANSGTPPETPKR 152
Query: 422 NELDSKVV--------TPRSQMVTSSDPNLRVTLCHHRRRMSNL 315
+ D+ + +PRS+MVTSSDPN+R LCHH+RRMS+L
Sbjct: 153 HIKDNSLQRKNMNDTSSPRSKMVTSSDPNVRAKLCHHKRRMSSL 196
>ref|NP_603039.1| Hemolysin [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
gi|19713561|gb|AAL94338.1| Hemolysin [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
Length = 2462
Score = 32.7 bits (73), Expect = 3.7
Identities = 27/79 (34%), Positives = 35/79 (44%)
Frame = +3
Query: 54 IVSHLKWLYNLIIKGLTRPNKLKNGEGPG*TVNRSQTLTAPENTPINTTLSLQLVKENTN 233
+V L +L I G N + NGE G + T+TA N N LS Q +
Sbjct: 575 LVGKLHGAQSLTISG---KNIINNGETTG---TGTTTITASNNFTNNKNLSAQTLTLTAT 628
Query: 234 GKRVNMQPLHNIKVSAFGN 290
G VN + L+ KVS GN
Sbjct: 629 GDVVNNKELNGGKVSITGN 647
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 490,417,189
Number of Sequences: 1393205
Number of extensions: 9918135
Number of successful extensions: 19167
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 18693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19154
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
