Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000452A_C01 KMC000452A_c01
(766 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA60412.1| fis1 [Linum usitatissimum] 206 2e-52
gb|AAK73756.1| delta-1-pyrroline-5-carboxylate dehydrogenase pre... 205 5e-52
ref|NP_568955.1| dehydrogenase; protein id: At5g62530.1, support... 204 1e-51
dbj|BAB11503.1| dehydrogenase [Arabidopsis thaliana] 204 1e-51
gb|AAL70108.1|AF467541_1 putative aldehyde dehydrogenase MIS1 [Z... 194 9e-49
>emb|CAA60412.1| fis1 [Linum usitatissimum]
Length = 551
Score = 206 bits (525), Expect = 2e-52
Identities = 96/107 (89%), Positives = 102/107 (94%)
Frame = -1
Query: 766 TDYKSSQLSIVLDALEKMHAHLTAAVVSNDPLFLQEVIGKSVNGTTYAGLRARTTGAPQN 587
T+YK+SQL +VL+ALE+MHAHLTAAVVSND LFLQEVIG +VNGTTYAGLRARTTGAPQN
Sbjct: 445 TEYKNSQLPMVLEALERMHAHLTAAVVSNDQLFLQEVIGNTVNGTTYAGLRARTTGAPQN 504
Query: 586 HWFGPAGDPRGAGIGTPEAIKLVWSCHREIIYDIGPVPEHWEIPPST 446
HWFGPAGDPRGAGIGTPEAIKLVWSCHREIIYDIGPV HWEIPPST
Sbjct: 505 HWFGPAGDPRGAGIGTPEAIKLVWSCHREIIYDIGPVSHHWEIPPST 551
>gb|AAK73756.1| delta-1-pyrroline-5-carboxylate dehydrogenase precursor
[Arabidopsis thaliana]
Length = 556
Score = 205 bits (522), Expect = 5e-52
Identities = 93/107 (86%), Positives = 100/107 (92%)
Frame = -1
Query: 766 TDYKSSQLSIVLDALEKMHAHLTAAVVSNDPLFLQEVIGKSVNGTTYAGLRARTTGAPQN 587
T+YK QL +VLDALE+MHAHLTAAVVSNDP+FLQEVIG SVNGTTYAGLR RTTGAPQN
Sbjct: 450 TEYKKDQLPLVLDALERMHAHLTAAVVSNDPIFLQEVIGNSVNGTTYAGLRGRTTGAPQN 509
Query: 586 HWFGPAGDPRGAGIGTPEAIKLVWSCHREIIYDIGPVPEHWEIPPST 446
HWFGPAGDPRGAGIGTPEAIKLVWSCHRE+IYD GPVP+ WE+PPST
Sbjct: 510 HWFGPAGDPRGAGIGTPEAIKLVWSCHREVIYDYGPVPQGWELPPST 556
>ref|NP_568955.1| dehydrogenase; protein id: At5g62530.1, supported by cDNA:
gi_15383743, supported by cDNA: gi_17473532 [Arabidopsis
thaliana] gi|17473533|gb|AAL38248.1| dehydrogenase
[Arabidopsis thaliana] gi|23397209|gb|AAN31887.1|
putative dehydrogenase [Arabidopsis thaliana]
Length = 556
Score = 204 bits (518), Expect = 1e-51
Identities = 92/107 (85%), Positives = 100/107 (92%)
Frame = -1
Query: 766 TDYKSSQLSIVLDALEKMHAHLTAAVVSNDPLFLQEVIGKSVNGTTYAGLRARTTGAPQN 587
T+YK QL +VL+ALE+MHAHLTAAVVSNDP+FLQEVIG SVNGTTYAGLR RTTGAPQN
Sbjct: 450 TEYKKDQLPLVLEALERMHAHLTAAVVSNDPIFLQEVIGNSVNGTTYAGLRGRTTGAPQN 509
Query: 586 HWFGPAGDPRGAGIGTPEAIKLVWSCHREIIYDIGPVPEHWEIPPST 446
HWFGPAGDPRGAGIGTPEAIKLVWSCHRE+IYD GPVP+ WE+PPST
Sbjct: 510 HWFGPAGDPRGAGIGTPEAIKLVWSCHREVIYDYGPVPQGWELPPST 556
>dbj|BAB11503.1| dehydrogenase [Arabidopsis thaliana]
Length = 556
Score = 204 bits (518), Expect = 1e-51
Identities = 92/107 (85%), Positives = 100/107 (92%)
Frame = -1
Query: 766 TDYKSSQLSIVLDALEKMHAHLTAAVVSNDPLFLQEVIGKSVNGTTYAGLRARTTGAPQN 587
T+YK QL +VL+ALE+MHAHLTAAVVSNDP+FLQEVIG SVNGTTYAGLR RTTGAPQN
Sbjct: 450 TEYKKDQLPLVLEALERMHAHLTAAVVSNDPIFLQEVIGNSVNGTTYAGLRGRTTGAPQN 509
Query: 586 HWFGPAGDPRGAGIGTPEAIKLVWSCHREIIYDIGPVPEHWEIPPST 446
HWFGPAGDPRGAGIGTPEAIKLVWSCHRE+IYD GPVP+ WE+PPST
Sbjct: 510 HWFGPAGDPRGAGIGTPEAIKLVWSCHREVIYDYGPVPQGWELPPST 556
>gb|AAL70108.1|AF467541_1 putative aldehyde dehydrogenase MIS1 [Zea mays]
Length = 549
Score = 194 bits (494), Expect = 9e-49
Identities = 86/107 (80%), Positives = 99/107 (92%)
Frame = -1
Query: 766 TDYKSSQLSIVLDALEKMHAHLTAAVVSNDPLFLQEVIGKSVNGTTYAGLRARTTGAPQN 587
T+Y QL +VL+A E+M+AHLTAAVVSNDPLFLQ+V+G+SVNGTTYAG+RARTTGAPQN
Sbjct: 443 TEYSEDQLELVLEACERMNAHLTAAVVSNDPLFLQDVLGRSVNGTTYAGIRARTTGAPQN 502
Query: 586 HWFGPAGDPRGAGIGTPEAIKLVWSCHREIIYDIGPVPEHWEIPPST 446
HWFGPAGDPRGAGIGTPEAIKLVWSCHRE+IYD+GPVPE W +P +T
Sbjct: 503 HWFGPAGDPRGAGIGTPEAIKLVWSCHREVIYDVGPVPESWALPSAT 549
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 622,207,194
Number of Sequences: 1393205
Number of extensions: 13978066
Number of successful extensions: 28539
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 27680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28528
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 37254821786
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
