Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000451A_C01 KMC000451A_c01
(520 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC10891.1| GAG-POL precursor [Oryza sativa (japonica cultiv... 35 0.68
gb|AAL66756.1|AF464738_7 putative prpol [Zea mays] 33 1.5
pir||T14595 polyprotein - maize retrotransposon Cinful-1 gi|4206... 33 2.6
gb|AAL76007.1|AF466646_15 prpol [Zea mays] 33 2.6
ref|NP_015008.1| peroxisome induction pathway 2 (PIP2); transcri... 33 2.6
>dbj|BAC10891.1| GAG-POL precursor [Oryza sativa (japonica cultivar-group)]
Length = 1032
Score = 34.7 bits (78), Expect = 0.68
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +3
Query: 420 MCVC*TDINKDCPRXP--LTSINALVDYSSSYEYL 518
MCV TD+NK CP+ P L I+ +VD ++ YE L
Sbjct: 74 MCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGYELL 108
>gb|AAL66756.1|AF464738_7 putative prpol [Zea mays]
Length = 969
Score = 33.5 bits (75), Expect = 1.5
Identities = 16/35 (45%), Positives = 25/35 (70%), Gaps = 2/35 (5%)
Frame = +3
Query: 420 MCVC*TDINKDCPR--XPLTSINALVDYSSSYEYL 518
MC+ TD+NK CP+ PL+ I++LVD ++S E +
Sbjct: 559 MCIDFTDLNKACPKDEFPLSRIDSLVDAAASSELM 593
>pir||T14595 polyprotein - maize retrotransposon Cinful-1
gi|4206306|gb|AAD11615.1| prpol [Zea mays]
Length = 1317
Score = 32.7 bits (73), Expect = 2.6
Identities = 16/35 (45%), Positives = 24/35 (67%), Gaps = 2/35 (5%)
Frame = +3
Query: 420 MCVC*TDINKDCPR--XPLTSINALVDYSSSYEYL 518
MC+ TD+NK CP+ PL I++LVD ++S E +
Sbjct: 365 MCIDFTDLNKACPKDEFPLPRIDSLVDATASSELM 399
>gb|AAL76007.1|AF466646_15 prpol [Zea mays]
Length = 1317
Score = 32.7 bits (73), Expect = 2.6
Identities = 16/35 (45%), Positives = 24/35 (67%), Gaps = 2/35 (5%)
Frame = +3
Query: 420 MCVC*TDINKDCPR--XPLTSINALVDYSSSYEYL 518
MC+ TD+NK CP+ PL I++LVD ++S E +
Sbjct: 365 MCIDFTDLNKACPKDEFPLPRIDSLVDAAASSELM 399
>ref|NP_015008.1| peroxisome induction pathway 2 (PIP2); transcriptional activator of
peroxisome proliferation; may form heterodimer with Oaf1
to activate oleate-inducible gene expression; Pip2p
[Saccharomyces cerevisiae]
gi|1730572|sp|P52960|PIP2_YEAST PEROXISOME PROLIFERATION
TRANSCRIPTIONAL REGULATOR gi|2133181|pir||S70646
transcription factor PIP2 - yeast (Saccharomyces
cerevisiae) gi|1177646|emb|CAA63046.1| activator of
peroxisome proliferation [Saccharomyces cerevisiae]
gi|1420788|emb|CAA99692.1| ORF YOR363c [Saccharomyces
cerevisiae]
Length = 996
Score = 32.7 bits (73), Expect = 2.6
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 10/82 (12%)
Frame = -1
Query: 397 ILCCECNMRIKISSNKNLT*LLKSLNRIKDKCPNKILNMH----YSISFTFFFFFEI--- 239
+ C ECN R IS + +KSL+ IK+ +L ++ ++ F +F+ F++
Sbjct: 709 VKCNECNARGDISDLPEIKEKIKSLDTIKENFERLLLEVYLLASQNLRFKYFYIFKMLTL 768
Query: 238 --NFIQ-LRRNRWRRGRYISLD 182
FIQ LR+ + G ++ +D
Sbjct: 769 FDVFIQRLRKGQLFSGLFVKVD 790
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 380,073,819
Number of Sequences: 1393205
Number of extensions: 7368223
Number of successful extensions: 15062
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 14526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15050
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
