Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000443A_C01 KMC000443A_c01
(566 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176490.1| RNA polymerase IIA large subunit, putative; pro... 52 7e-06
pir||D96655 hypothetical protein F16M19.19 [imported] - Arabidop... 52 7e-06
gb|AAM21312.1|AF371327_1 EMB514 [Arabidopsis thaliana] gi|215934... 38 0.10
ref|NP_201050.1| putative protein; protein id: At5g62440.1 [Arab... 38 0.10
ref|NP_181533.1| unknown protein; protein id: At2g40040.1 [Arabi... 33 2.5
>ref|NP_176490.1| RNA polymerase IIA large subunit, putative; protein id: At1g63020.1
[Arabidopsis thaliana]
Length = 1432
Score = 51.6 bits (122), Expect = 7e-06
Identities = 22/45 (48%), Positives = 29/45 (63%)
Frame = -3
Query: 564 HKDSRCFHIIRSDESVEDFSYRKCILRALEIVDPGKFRIQKKKWL 430
H DS CF ++R D + EDFSY KC+L A +I+ P K K K+L
Sbjct: 1374 HGDSCCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKMNFYKSKYL 1418
>pir||D96655 hypothetical protein F16M19.19 [imported] - Arabidopsis thaliana
gi|8493592|gb|AAF75815.1|AC011000_18 Contains similarity
to DNA-directed RNA Polymerase alpha-subunit from
Methanococcus jannaschii gi|3915860 and contains
Ribosomal protein L36 PF|00444 and RNA-Polymerase
alpha-subunit PF|00623 domains. EST gb|AA597311 comes
from this gene. [Arabidopsis thaliana]
gi|12323252|gb|AAG51604.1|AC010795_8 RNA polymerase IIA
largest subunit, putative; 12353-6556 [Arabidopsis
thaliana]
Length = 1453
Score = 51.6 bits (122), Expect = 7e-06
Identities = 22/45 (48%), Positives = 29/45 (63%)
Frame = -3
Query: 564 HKDSRCFHIIRSDESVEDFSYRKCILRALEIVDPGKFRIQKKKWL 430
H DS CF ++R D + EDFSY KC+L A +I+ P K K K+L
Sbjct: 1395 HGDSCCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKMNFYKSKYL 1439
>gb|AAM21312.1|AF371327_1 EMB514 [Arabidopsis thaliana] gi|21593438|gb|AAM65405.1| unknown
[Arabidopsis thaliana]
Length = 202
Score = 37.7 bits (86), Expect = 0.10
Identities = 13/28 (46%), Positives = 22/28 (78%)
Frame = -3
Query: 555 SRCFHIIRSDESVEDFSYRKCILRALEI 472
SRCF ++R D++ +DFS+RKC+ + L +
Sbjct: 137 SRCFFLVREDDTADDFSFRKCVDQILPL 164
>ref|NP_201050.1| putative protein; protein id: At5g62440.1 [Arabidopsis thaliana]
gi|10178075|dbj|BAB11494.1| gene_id:K19B1.5~similar to
unknown protein~sp|Q42463 [Arabidopsis thaliana]
Length = 100
Score = 37.7 bits (86), Expect = 0.10
Identities = 13/28 (46%), Positives = 22/28 (78%)
Frame = -3
Query: 555 SRCFHIIRSDESVEDFSYRKCILRALEI 472
SRCF ++R D++ +DFS+RKC+ + L +
Sbjct: 35 SRCFFLVREDDTADDFSFRKCVDQILPL 62
>ref|NP_181533.1| unknown protein; protein id: At2g40040.1 [Arabidopsis thaliana]
gi|25408660|pir||E84824 hypothetical protein At2g40040
[imported] - Arabidopsis thaliana
gi|2088657|gb|AAB95289.1| unknown protein [Arabidopsis
thaliana]
Length = 839
Score = 33.1 bits (74), Expect = 2.5
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = -3
Query: 558 DSRCFHIIRSDESVEDFSYRKCI 490
DSRCF ++ +D + +DFSYRK +
Sbjct: 668 DSRCFFVVSTDGAKQDFSYRKSL 690
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 462,980,199
Number of Sequences: 1393205
Number of extensions: 9136697
Number of successful extensions: 20171
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 19534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20168
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
