Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000437A_C02 KMC000437A_c02
(666 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C86416 unknown protein, 25451-20507 [imported] - Arabidopsi... 88 6e-20
pir||B86416 unknown protein, 16040-11188 [imported] - Arabidopsi... 88 6e-20
ref|NP_174230.2| unknown protein; protein id: At1g29370.1, suppo... 88 6e-20
ref|NP_174229.2| unknown protein; protein id: At1g29350.1, suppo... 88 6e-20
dbj|BAB63535.1| P0003E08.1 [Oryza sativa (japonica cultivar-grou... 92 5e-18
>pir||C86416 unknown protein, 25451-20507 [imported] - Arabidopsis thaliana
gi|12323523|gb|AAG51735.1|AC068667_14 unknown protein;
25451-20507 [Arabidopsis thaliana]
Length = 858
Score = 88.2 bits (217), Expect(2) = 6e-20
Identities = 46/85 (54%), Positives = 52/85 (61%), Gaps = 11/85 (12%)
Frame = -1
Query: 660 QQQNENSPMWVHGPGSRTMSAVPPSTYYSFQGQNQQPAGFRLNQQPS-----------QQ 514
QQQNENS MW G GSRTMS VP +TYY+ Q Q Q + QQ + QQ
Sbjct: 748 QQQNENSAMWHQGHGSRTMSGVPTNTYYNLQAQQQLQLQHQQQQQQAQQAAGGYRQAQQQ 807
Query: 513 QHFGQLGYPNFYHSQTGMSLEHQQQ 439
QH+G GYPN+Y SQT MSLE QQQ
Sbjct: 808 QHYGSHGYPNYYQSQTEMSLERQQQ 832
Score = 31.2 bits (69), Expect(2) = 6e-20
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = -2
Query: 449 ISNSSSSQNARESLAGSQSQQP--KQSQQIWQNSY 351
+S QN R+ AGSQ+ QP + QQ+WQNSY
Sbjct: 825 MSLERQQQNPRDG-AGSQAGQPSNQSQQQLWQNSY 858
>pir||B86416 unknown protein, 16040-11188 [imported] - Arabidopsis thaliana
gi|12323517|gb|AAG51729.1|AC068667_8 unknown protein;
16040-11188 [Arabidopsis thaliana]
Length = 858
Score = 88.2 bits (217), Expect(2) = 6e-20
Identities = 46/85 (54%), Positives = 52/85 (61%), Gaps = 11/85 (12%)
Frame = -1
Query: 660 QQQNENSPMWVHGPGSRTMSAVPPSTYYSFQGQNQQPAGFRLNQQPS-----------QQ 514
QQQNENS MW G GSRTMS VP +TYY+ Q Q Q + QQ + QQ
Sbjct: 748 QQQNENSAMWHQGHGSRTMSGVPTNTYYNLQAQQQLQLQHQQQQQQAQQAAGGYRQAQQQ 807
Query: 513 QHFGQLGYPNFYHSQTGMSLEHQQQ 439
QH+G GYPN+Y SQT MSLE QQQ
Sbjct: 808 QHYGSHGYPNYYQSQTEMSLERQQQ 832
Score = 31.2 bits (69), Expect(2) = 6e-20
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = -2
Query: 449 ISNSSSSQNARESLAGSQSQQP--KQSQQIWQNSY 351
+S QN R+ AGSQ+ QP + QQ+WQNSY
Sbjct: 825 MSLERQQQNPRDG-AGSQAGQPSNQSQQQLWQNSY 858
>ref|NP_174230.2| unknown protein; protein id: At1g29370.1, supported by cDNA:
gi_17380759, supported by cDNA: gi_20465690 [Arabidopsis
thaliana] gi|17380760|gb|AAL36210.1| unknown protein
[Arabidopsis thaliana] gi|20465691|gb|AAM20314.1|
unknown protein [Arabidopsis thaliana]
Length = 831
Score = 88.2 bits (217), Expect(2) = 6e-20
Identities = 46/85 (54%), Positives = 52/85 (61%), Gaps = 11/85 (12%)
Frame = -1
Query: 660 QQQNENSPMWVHGPGSRTMSAVPPSTYYSFQGQNQQPAGFRLNQQPS-----------QQ 514
QQQNENS MW G GSRTMS VP +TYY+ Q Q Q + QQ + QQ
Sbjct: 721 QQQNENSAMWHQGHGSRTMSGVPTNTYYNLQAQQQLQLQHQQQQQQAQQAAGGYRQAQQQ 780
Query: 513 QHFGQLGYPNFYHSQTGMSLEHQQQ 439
QH+G GYPN+Y SQT MSLE QQQ
Sbjct: 781 QHYGSHGYPNYYQSQTEMSLERQQQ 805
Score = 31.2 bits (69), Expect(2) = 6e-20
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = -2
Query: 449 ISNSSSSQNARESLAGSQSQQP--KQSQQIWQNSY 351
+S QN R+ AGSQ+ QP + QQ+WQNSY
Sbjct: 798 MSLERQQQNPRDG-AGSQAGQPSNQSQQQLWQNSY 831
>ref|NP_174229.2| unknown protein; protein id: At1g29350.1, supported by cDNA:
gi_18087626 [Arabidopsis thaliana]
Length = 831
Score = 88.2 bits (217), Expect(2) = 6e-20
Identities = 46/85 (54%), Positives = 52/85 (61%), Gaps = 11/85 (12%)
Frame = -1
Query: 660 QQQNENSPMWVHGPGSRTMSAVPPSTYYSFQGQNQQPAGFRLNQQPS-----------QQ 514
QQQNENS MW G GSRTMS VP +TYY+ Q Q Q + QQ + QQ
Sbjct: 721 QQQNENSAMWHQGHGSRTMSGVPTNTYYNLQAQQQLQLQHQQQQQQAQQAAGGYRQAQQQ 780
Query: 513 QHFGQLGYPNFYHSQTGMSLEHQQQ 439
QH+G GYPN+Y SQT MSLE QQQ
Sbjct: 781 QHYGSHGYPNYYQSQTEMSLERQQQ 805
Score = 31.2 bits (69), Expect(2) = 6e-20
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = -2
Query: 449 ISNSSSSQNARESLAGSQSQQP--KQSQQIWQNSY 351
+S QN R+ AGSQ+ QP + QQ+WQNSY
Sbjct: 798 MSLERQQQNPRDG-AGSQAGQPSNQSQQQLWQNSY 831
>dbj|BAB63535.1| P0003E08.1 [Oryza sativa (japonica cultivar-group)]
gi|20521233|dbj|BAB91750.1| P0671D01.27 [Oryza sativa
(japonica cultivar-group)]
Length = 495
Score = 92.4 bits (228), Expect = 5e-18
Identities = 46/73 (63%), Positives = 53/73 (72%), Gaps = 1/73 (1%)
Frame = -1
Query: 657 QQNENSPMWVHG-PGSRTMSAVPPSTYYSFQGQNQQPAGFRLNQQPSQQQHFGQLGYPNF 481
QQN+NS MW+HG GSR +SAVPP +Y FQGQN QP GFR QQPSQ +G LGYP+F
Sbjct: 401 QQNDNSAMWLHGAAGSRAVSAVPPGNFYGFQGQN-QPGGFRQGQQPSQ---YGGLGYPSF 456
Query: 480 YHSQTGMSLEHQQ 442
Y SQ G+ EH Q
Sbjct: 457 YQSQAGLPQEHPQ 469
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 586,638,353
Number of Sequences: 1393205
Number of extensions: 12840621
Number of successful extensions: 48142
Number of sequences better than 10.0: 228
Number of HSP's better than 10.0 without gapping: 35776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43859
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28855580904
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
