Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000436A_C01 KMC000436A_c01
(486 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567916.1| F-box protein family, AtFBL15; protein id: At4g... 68 5e-11
dbj|BAC42533.1| unknown protein [Arabidopsis thaliana] 68 5e-11
pir||T05201 hypothetical protein F4I10.140 - Arabidopsis thalian... 40 0.010
gb|AAM01146.1|AC108884_28 Putative F-box protein family [Oryza s... 40 0.014
gb|EAA15857.1| solute carrier family 35, member 2, putative [Pla... 35 0.34
>ref|NP_567916.1| F-box protein family, AtFBL15; protein id: At4g33210.1 [Arabidopsis
thaliana]
Length = 942
Score = 68.2 bits (165), Expect = 5e-11
Identities = 33/47 (70%), Positives = 38/47 (80%)
Frame = -1
Query: 483 DEETVEAAISKCTMLETLDVRCCPKISSMSMGRFRAACCSLKRIFSS 343
DE VEAAIS C+ LETLD+R CPKISS+SM +FR C SLKR+FSS
Sbjct: 890 DEAGVEAAISGCSSLETLDLRFCPKISSVSMSKFRTVCPSLKRVFSS 936
>dbj|BAC42533.1| unknown protein [Arabidopsis thaliana]
Length = 309
Score = 68.2 bits (165), Expect = 5e-11
Identities = 33/47 (70%), Positives = 38/47 (80%)
Frame = -1
Query: 483 DEETVEAAISKCTMLETLDVRCCPKISSMSMGRFRAACCSLKRIFSS 343
DE VEAAIS C+ LETLD+R CPKISS+SM +FR C SLKR+FSS
Sbjct: 257 DEAGVEAAISGCSSLETLDLRFCPKISSVSMSKFRTVCPSLKRVFSS 303
>pir||T05201 hypothetical protein F4I10.140 - Arabidopsis thaliana
gi|4455335|emb|CAB36795.1| putative protein [Arabidopsis
thaliana] gi|7270269|emb|CAB80038.1| putative protein
[Arabidopsis thaliana]
Length = 934
Score = 40.4 bits (93), Expect = 0.010
Identities = 18/30 (60%), Positives = 24/30 (80%)
Frame = -1
Query: 483 DEETVEAAISKCTMLETLDVRCCPKISSMS 394
DE VEAAIS C+ LETLD+R CPK+ +++
Sbjct: 903 DEAGVEAAISGCSSLETLDLRFCPKVLTIN 932
>gb|AAM01146.1|AC108884_28 Putative F-box protein family [Oryza sativa (japonica
cultivar-group)] gi|21263213|gb|AAM44890.1|AC122144_13
Putative F-box protein family [Oryza sativa (japonica
cultivar-group)]
Length = 1152
Score = 40.0 bits (92), Expect = 0.014
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = -1
Query: 480 EETVEAAISKCTMLETLDVRCCPKISSMSMGRFRAA 373
+E +E+AIS+C+ LE L+V CPKI+ + R R A
Sbjct: 897 DEELESAISRCSALEILNVHSCPKINVLDFSRLRVA 932
>gb|EAA15857.1| solute carrier family 35, member 2, putative [Plasmodium yoelii
yoelii]
Length = 347
Score = 35.4 bits (80), Expect = 0.34
Identities = 28/70 (40%), Positives = 38/70 (54%)
Frame = -3
Query: 265 GNKSGLFPHVFVNGLTYCVCLAYRN*VIFMYCYNKLLFVLPINYCKFYVSILLMHILCLS 86
G K G + F+NGL +CV Y +IF Y Y + + L KFY +I L+ ILCLS
Sbjct: 18 GLKEGSGLYNFLNGL-FCVSGIYIFFLIFGY-YQEKIPTLGKGKDKFYYNIFLICILCLS 75
Query: 85 GLTLSLVKIW 56
SL+ I+
Sbjct: 76 NSLGSLLSIF 85
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 379,325,404
Number of Sequences: 1393205
Number of extensions: 7445601
Number of successful extensions: 16871
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 16410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16869
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13980339936
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
