Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000432A_C02 KMC000432A_c02
(564 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB32724.1| P0492F05.26 [Oryza sativa (japonica cultivar-gro... 54 2e-06
ref|NP_564824.1| expressed protein; protein id: At1g64110.1, sup... 52 4e-06
pir||G96665 protein F22C12.12 [imported] - Arabidopsis thaliana ... 52 4e-06
ref|NP_194529.1| putative protein; protein id: At4g28000.1 [Arab... 50 3e-05
dbj|BAB21091.1| P0501G01.20 [Oryza sativa (japonica cultivar-gro... 47 2e-04
>dbj|BAB32724.1| P0492F05.26 [Oryza sativa (japonica cultivar-group)]
gi|20804417|dbj|BAB92115.1| P0443E07.18 [Oryza sativa
(japonica cultivar-group)]
Length = 810
Score = 53.5 bits (127), Expect = 2e-06
Identities = 23/24 (95%), Positives = 24/24 (99%)
Frame = -2
Query: 563 ELKQWNELYGEGGTRKKQQLTYFL 492
ELKQWNELYGEGG+RKKQQLTYFL
Sbjct: 787 ELKQWNELYGEGGSRKKQQLTYFL 810
>ref|NP_564824.1| expressed protein; protein id: At1g64110.1, supported by cDNA:
gi_15810166 [Arabidopsis thaliana]
gi|15810167|gb|AAL06985.1| At1g64110/F22C12_22
[Arabidopsis thaliana]
Length = 824
Score = 52.4 bits (124), Expect = 4e-06
Identities = 22/24 (91%), Positives = 24/24 (99%)
Frame = -2
Query: 563 ELKQWNELYGEGGTRKKQQLTYFL 492
ELKQWNELYGEGG+RKK+QLTYFL
Sbjct: 801 ELKQWNELYGEGGSRKKEQLTYFL 824
>pir||G96665 protein F22C12.12 [imported] - Arabidopsis thaliana
gi|6692099|gb|AAF24564.1|AC007764_6 F22C12.12
[Arabidopsis thaliana]
Length = 825
Score = 52.4 bits (124), Expect = 4e-06
Identities = 22/24 (91%), Positives = 24/24 (99%)
Frame = -2
Query: 563 ELKQWNELYGEGGTRKKQQLTYFL 492
ELKQWNELYGEGG+RKK+QLTYFL
Sbjct: 802 ELKQWNELYGEGGSRKKEQLTYFL 825
>ref|NP_194529.1| putative protein; protein id: At4g28000.1 [Arabidopsis thaliana]
gi|7487959|pir||T02901 MSP1 protein homolog T13J8.110 -
Arabidopsis thaliana gi|4455359|emb|CAB36769.1| putative
protein [Arabidopsis thaliana]
gi|7269654|emb|CAB79602.1| putative protein [Arabidopsis
thaliana]
Length = 726
Score = 49.7 bits (117), Expect = 3e-05
Identities = 20/24 (83%), Positives = 24/24 (99%)
Frame = -2
Query: 563 ELKQWNELYGEGGTRKKQQLTYFL 492
ELKQWN+LYGEGG+RKK+QL+YFL
Sbjct: 703 ELKQWNDLYGEGGSRKKEQLSYFL 726
>dbj|BAB21091.1| P0501G01.20 [Oryza sativa (japonica cultivar-group)]
Length = 812
Score = 46.6 bits (109), Expect = 2e-04
Identities = 17/24 (70%), Positives = 24/24 (99%)
Frame = -2
Query: 563 ELKQWNELYGEGGTRKKQQLTYFL 492
++K+WNELYG+GG+RK++QLTYFL
Sbjct: 789 QIKEWNELYGKGGSRKREQLTYFL 812
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 485,086,194
Number of Sequences: 1393205
Number of extensions: 10426207
Number of successful extensions: 21987
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 21371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21970
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
