Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000418A_C01 KMC000418A_c01
(481 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174267.1| receptor-like serine/threonine kinase, putative... 43 0.002
gb|AAG50774.1|AC079288_3 receptor protein kinase, putative [Arab... 43 0.002
pir||H86420 probable receptor-like serine/threonine kinase [impo... 43 0.002
dbj|BAB02650.1| receptor-like serine/threonine kinase [Arabidops... 41 0.006
ref|NP_188102.1| receptor-like serine/threonine kinase, putative... 41 0.006
>ref|NP_174267.1| receptor-like serine/threonine kinase, putative; protein id:
At1g29740.1 [Arabidopsis thaliana]
Length = 1049
Score = 42.7 bits (99), Expect = 0.002
Identities = 23/73 (31%), Positives = 36/73 (48%)
Frame = -3
Query: 479 LRPSMSTVVXMLEGRTIVQEVVPDTSGVSDDKKFEAMRQYYQQRGPNNQTETSSQSIPTD 300
LRP+MS VV MLEG T ++E++ D D+ +F+ E S S+P+D
Sbjct: 907 LRPTMSEVVKMLEGETEIEEIISDPGAYGDELRFK------------KTAEIGSSSLPSD 954
Query: 299 ESCAFMPDTDSSY 261
+ +S+Y
Sbjct: 955 YLVSITSSCESAY 967
>gb|AAG50774.1|AC079288_3 receptor protein kinase, putative [Arabidopsis thaliana]
Length = 1040
Score = 42.7 bits (99), Expect = 0.002
Identities = 23/73 (31%), Positives = 36/73 (48%)
Frame = -3
Query: 479 LRPSMSTVVXMLEGRTIVQEVVPDTSGVSDDKKFEAMRQYYQQRGPNNQTETSSQSIPTD 300
LRP+MS VV MLEG T ++E++ D D+ +F+ E S S+P+D
Sbjct: 898 LRPTMSEVVKMLEGETEIEEIISDPGAYGDELRFK------------KTAEIGSSSLPSD 945
Query: 299 ESCAFMPDTDSSY 261
+ +S+Y
Sbjct: 946 YLVSITSSCESAY 958
>pir||H86420 probable receptor-like serine/threonine kinase [imported] -
Arabidopsis thaliana gi|9972370|gb|AAG10620.1|AC008030_20
Putative receptor-like serine/threonine kinase
[Arabidopsis thaliana]
Length = 940
Score = 42.7 bits (99), Expect = 0.002
Identities = 23/73 (31%), Positives = 36/73 (48%)
Frame = -3
Query: 479 LRPSMSTVVXMLEGRTIVQEVVPDTSGVSDDKKFEAMRQYYQQRGPNNQTETSSQSIPTD 300
LRP+MS VV MLEG T ++E++ D D+ +F+ E S S+P+D
Sbjct: 865 LRPTMSEVVKMLEGETEIEEIISDPGAYGDELRFK------------KTAEIGSSSLPSD 912
Query: 299 ESCAFMPDTDSSY 261
+ +S+Y
Sbjct: 913 YLVSITSSCESAY 925
>dbj|BAB02650.1| receptor-like serine/threonine kinase [Arabidopsis thaliana]
Length = 1042
Score = 41.2 bits (95), Expect = 0.006
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 11/87 (12%)
Frame = -3
Query: 476 RPSMSTVVXMLEGRTIV---QEVVPDTSGVSDDKKFEAMRQYYQQRGPNNQTETSSQSIP 306
RPSMSTVV MLEG + V + + + D++ AM+++Y G T T++ P
Sbjct: 955 RPSMSTVVSMLEGHSTVNVEKLLEASVNNEKDEESVRAMKRHYATIGEEEITNTTTTDGP 1014
Query: 305 TDESCA--------FMPDTDSSYWEAR 249
S + DS+YW R
Sbjct: 1015 FTSSSTSTANANDLYPVKLDSAYWNTR 1041
>ref|NP_188102.1| receptor-like serine/threonine kinase, putative; protein id:
At3g14840.2 [Arabidopsis thaliana]
Length = 988
Score = 41.2 bits (95), Expect = 0.006
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 11/87 (12%)
Frame = -3
Query: 476 RPSMSTVVXMLEGRTIV---QEVVPDTSGVSDDKKFEAMRQYYQQRGPNNQTETSSQSIP 306
RPSMSTVV MLEG + V + + + D++ AM+++Y G T T++ P
Sbjct: 901 RPSMSTVVSMLEGHSTVNVEKLLEASVNNEKDEESVRAMKRHYATIGEEEITNTTTTDGP 960
Query: 305 TDESCA--------FMPDTDSSYWEAR 249
S + DS+YW R
Sbjct: 961 FTSSSTSTANANDLYPVKLDSAYWNTR 987
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 409,091,989
Number of Sequences: 1393205
Number of extensions: 8531705
Number of successful extensions: 22384
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 21975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22382
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13397825772
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
