Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000414A_C02 KMC000414A_c02
(612 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB39730.1| adaptor protein complex AP-1 large subunit; gamm... 80 3e-14
ref|NP_173802.1| gamma-adaptin, putative; protein id: At1g23900.... 80 3e-14
pir||T51951 gamma-adaptin 1 [imported] - Arabidopsis thaliana gi... 80 3e-14
gb|AAF87139.1|AC002423_4 T23E23.7 [Arabidopsis thaliana] 80 3e-14
ref|NP_176215.1| gamma-adaptin, putative; protein id: At1g60070.... 75 7e-13
>emb|CAB39730.1| adaptor protein complex AP-1 large subunit; gamma-adaptin 2
[Arabidopsis thaliana]
Length = 876
Score = 79.7 bits (195), Expect = 3e-14
Identities = 37/47 (78%), Positives = 42/47 (88%)
Frame = -2
Query: 611 GSITQTLRVTNNQHGKKSLVMRIRIAYKINGKDALEEGQISNFPRDL 471
G+ITQ LRVTN+Q GKKSLVMR+RI YK+NGKD LEEGQ+SNFPR L
Sbjct: 830 GAITQNLRVTNSQQGKKSLVMRMRIGYKLNGKDVLEEGQVSNFPRGL 876
>ref|NP_173802.1| gamma-adaptin, putative; protein id: At1g23900.1 [Arabidopsis
thaliana] gi|28393791|gb|AAO42305.1| putative
gamma-adaptin [Arabidopsis thaliana]
gi|28973305|gb|AAO63977.1| putative gamma-adaptin
[Arabidopsis thaliana]
Length = 876
Score = 79.7 bits (195), Expect = 3e-14
Identities = 37/47 (78%), Positives = 42/47 (88%)
Frame = -2
Query: 611 GSITQTLRVTNNQHGKKSLVMRIRIAYKINGKDALEEGQISNFPRDL 471
G+ITQ LRVTN+Q GKKSLVMR+RI YK+NGKD LEEGQ+SNFPR L
Sbjct: 830 GAITQNLRVTNSQQGKKSLVMRMRIGYKLNGKDVLEEGQVSNFPRGL 876
>pir||T51951 gamma-adaptin 1 [imported] - Arabidopsis thaliana
gi|3372671|gb|AAC28338.1| gamma-adaptin 1 [Arabidopsis
thaliana] gi|4704741|gb|AAD28247.1|AF124524_1
gamma-adaptin 1 [Arabidopsis thaliana]
Length = 876
Score = 79.7 bits (195), Expect = 3e-14
Identities = 37/47 (78%), Positives = 42/47 (88%)
Frame = -2
Query: 611 GSITQTLRVTNNQHGKKSLVMRIRIAYKINGKDALEEGQISNFPRDL 471
G+ITQ LRVTN+Q GKKSLVMR+RI YK+NGKD LEEGQ+SNFPR L
Sbjct: 830 GAITQNLRVTNSQQGKKSLVMRMRIGYKLNGKDVLEEGQVSNFPRGL 876
>gb|AAF87139.1|AC002423_4 T23E23.7 [Arabidopsis thaliana]
Length = 910
Score = 79.7 bits (195), Expect = 3e-14
Identities = 37/47 (78%), Positives = 42/47 (88%)
Frame = -2
Query: 611 GSITQTLRVTNNQHGKKSLVMRIRIAYKINGKDALEEGQISNFPRDL 471
G+ITQ LRVTN+Q GKKSLVMR+RI YK+NGKD LEEGQ+SNFPR L
Sbjct: 864 GAITQNLRVTNSQQGKKSLVMRMRIGYKLNGKDVLEEGQVSNFPRGL 910
>ref|NP_176215.1| gamma-adaptin, putative; protein id: At1g60070.1 [Arabidopsis
thaliana] gi|25404261|pir||B96625 hypothetical protein
T2K10.12 [imported] - Arabidopsis thaliana
gi|4249386|gb|AAD14483.1|AAD14483 Strong similarity to
gb|AF061286 gamma-adaptin 1 from Arabidopsis thaliana.
EST gb|H37393 comes from this gene
Length = 867
Score = 75.1 bits (183), Expect = 7e-13
Identities = 34/47 (72%), Positives = 41/47 (86%)
Frame = -2
Query: 611 GSITQTLRVTNNQHGKKSLVMRIRIAYKINGKDALEEGQISNFPRDL 471
G+I QT+RVTN+Q GKK +VMR+R+ YKINGKD LEEGQI+NFPR L
Sbjct: 821 GNIKQTMRVTNSQKGKKPIVMRMRVGYKINGKDVLEEGQINNFPRGL 867
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 509,182,967
Number of Sequences: 1393205
Number of extensions: 10871749
Number of successful extensions: 24102
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 23184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24066
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
