Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000385A_C01 KMC000385A_c01
(569 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ZP_00010091.1| hypothetical protein [Rhodopseudomonas palustris] 33 2.5
gb|ZP_00080575.1| hypothetical protein [Geobacter metallireducens] 33 3.3
ref|NP_040224.1| glycoprotein H [Saimiriine herpesvirus 2] gi|13... 32 7.3
gb|AAA21529.1| 5-enolpyruvylshikimate 3-phosphate synthase 32 7.3
gb|AAB48057.1| 5-enolpyruvylshikimate-3-phosphate synthetase [Ye... 31 9.5
>gb|ZP_00010091.1| hypothetical protein [Rhodopseudomonas palustris]
Length = 451
Score = 33.1 bits (74), Expect = 2.5
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +2
Query: 398 NSIASSIKPLRKLGRQTEHPEHRHPLAAS*ELTLQFPKHASLYMDQNL 541
+S+ + P++ LGR + P+ R+P A+ EL P++A LY ++
Sbjct: 81 SSVFRNRGPIKGLGRSVKRPQRRNPKLANRELPEGAPRYADLYAPSSI 128
>gb|ZP_00080575.1| hypothetical protein [Geobacter metallireducens]
Length = 207
Score = 32.7 bits (73), Expect = 3.3
Identities = 12/49 (24%), Positives = 26/49 (52%)
Frame = +3
Query: 21 FFFFFIKLWITFLSSNKNKL*PNYESKELEGIVLLVSLLQIIYIMKHNK 167
FF+ I WI ++ +L Y + L G+++ +L ++Y+ +H +
Sbjct: 148 FFWVTILTWIGYVIGENRELIMKYSHQALIGVIIFCVVLVVVYVRRHRR 196
>ref|NP_040224.1| glycoprotein H [Saimiriine herpesvirus 2]
gi|138321|sp|P16492|VGLH_HSVSA Glycoprotein H precursor
gi|73782|pir||VGBE11 glycoprotein H precursor -
saimiriine herpesvirus 1 (strain 11)
gi|60343|emb|CAA45645.1| glycoprotein H [Saimiriine
herpesvirus 2] gi|221846|dbj|BAA00302.1| glycoprotein H
[Saimiriine herpesvirus 2]
Length = 717
Score = 31.6 bits (70), Expect = 7.3
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +3
Query: 114 IVLLVSLLQIIYIMKHNKIMKQTIS--LSLYLSYTALLAYNSSFCPPAQWGEPQHQLPIL 287
I+L + L I Y++ + I ++L + +++ ++ C P Q G HQ+P++
Sbjct: 552 IILSIPLKNITYVISTKPVPNSKIYDVSEVFLKTSMIISAVNNDCKPYQGGSAAHQIPVI 611
Query: 288 KTVRVLELLNAFCQKCSEV 344
V V C CS V
Sbjct: 612 YNVTV---PRRGCPYCSSV 627
>gb|AAA21529.1| 5-enolpyruvylshikimate 3-phosphate synthase
Length = 434
Score = 31.6 bits (70), Expect = 7.3
Identities = 16/52 (30%), Positives = 25/52 (47%)
Frame = +2
Query: 368 NVYNWCVKLINSIASSIKPLRKLGRQTEHPEHRHPLAAS*ELTLQFPKHASL 523
N+YNW VK + + + LRK+G + E E L L+ +HA +
Sbjct: 336 NIYNWRVKETDRLTAMATELRKVGAEVEEGEEGEDFIRIQPLALENFQHAEI 387
>gb|AAB48057.1| 5-enolpyruvylshikimate-3-phosphate synthetase [Yersinia pestis]
Length = 424
Score = 31.2 bits (69), Expect = 9.5
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 353 PYSLINVYNWCVKLINSIASSIKPLRKLGRQTEHPE 460
P ++ N+YNW VK + + + LRK+G + E E
Sbjct: 329 PTTIRNIYNWRVKETDRLTAMATELRKVGAEVEEGE 364
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 476,976,485
Number of Sequences: 1393205
Number of extensions: 9583865
Number of successful extensions: 23216
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 21680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22973
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
