Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000355A_C01 KMC000355A_c01
(636 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197938.1| putative protein; protein id: At5g25560.1 [Arab... 187 8e-47
gb|AAD02556.1| PGPD14 [Petunia x hybrida] 168 5e-41
ref|NP_197683.1| PGPD14 protein; protein id: At5g22920.1, suppor... 152 4e-36
gb|AAM65683.1| PGPD14 protein [Arabidopsis thaliana] 152 5e-36
dbj|BAB68060.1| putative PGPD14 protein (pollen germination rela... 148 7e-35
>ref|NP_197938.1| putative protein; protein id: At5g25560.1 [Arabidopsis thaliana]
Length = 272
Score = 187 bits (476), Expect = 8e-47
Identities = 82/102 (80%), Positives = 93/102 (90%)
Frame = -2
Query: 635 FESVNDVTVMLCGHTIHKSCLNEMREHFQYACPLCSKSVCDMSKVWEKLDLEIAATPMPE 456
FES NDVTV+ CGHTIH+ CL EMR+H+QYACPLCSKSVCDMSKVWEK D+EIAATPMPE
Sbjct: 171 FESRNDVTVLPCGHTIHQKCLEEMRDHYQYACPLCSKSVCDMSKVWEKFDMEIAATPMPE 230
Query: 455 PYLNKMVWILCNDCGKTSQVRFHLVAQKCMNCKSYNTRQTRG 330
PY N+MV ILCNDCGK ++V++H+VAQKC NCKSYNTRQTRG
Sbjct: 231 PYQNRMVQILCNDCGKKAEVQYHVVAQKCPNCKSYNTRQTRG 272
>gb|AAD02556.1| PGPD14 [Petunia x hybrida]
Length = 285
Score = 168 bits (426), Expect = 5e-41
Identities = 69/102 (67%), Positives = 88/102 (85%)
Frame = -2
Query: 635 FESVNDVTVMLCGHTIHKSCLNEMREHFQYACPLCSKSVCDMSKVWEKLDLEIAATPMPE 456
F++ ++TV+ CGHT+H C+ +M +H QY+CP+CS+S CDMS+VWEKLD E+A+TPMPE
Sbjct: 170 FDTTKNITVLPCGHTMHLECVMQMEQHNQYSCPVCSRSYCDMSRVWEKLDQEVASTPMPE 229
Query: 455 PYLNKMVWILCNDCGKTSQVRFHLVAQKCMNCKSYNTRQTRG 330
Y NKMVWILCNDCG+TS+V FH+VA+KC NCKSYNTRQTRG
Sbjct: 230 MYQNKMVWILCNDCGETSEVNFHIVARKCPNCKSYNTRQTRG 271
>ref|NP_197683.1| PGPD14 protein; protein id: At5g22920.1, supported by cDNA: 41666.,
supported by cDNA: gi_15450520 [Arabidopsis thaliana]
gi|10177239|dbj|BAB10613.1| PGPD14 protein [Arabidopsis
thaliana] gi|15450521|gb|AAK96553.1| AT5g22920/MRN17_15
[Arabidopsis thaliana] gi|27363264|gb|AAO11551.1|
At5g22920/MRN17_15 [Arabidopsis thaliana]
Length = 291
Score = 152 bits (384), Expect = 4e-36
Identities = 63/101 (62%), Positives = 79/101 (77%)
Frame = -2
Query: 635 FESVNDVTVMLCGHTIHKSCLNEMREHFQYACPLCSKSVCDMSKVWEKLDLEIAATPMPE 456
F+S D+TV+ CGHT+H C +M H +Y CP+CSKS+CDMS +W+KLD E+AA PMP+
Sbjct: 171 FDSTRDITVLRCGHTMHLECTKDMGLHNRYTCPVCSKSICDMSNLWKKLDEEVAAYPMPK 230
Query: 455 PYLNKMVWILCNDCGKTSQVRFHLVAQKCMNCKSYNTRQTR 333
Y NKMVWILCNDCG + VRFHL+A KC +C SYNTRQT+
Sbjct: 231 MYENKMVWILCNDCGSNTNVRFHLIAHKCSSCGSYNTRQTQ 271
>gb|AAM65683.1| PGPD14 protein [Arabidopsis thaliana]
Length = 274
Score = 152 bits (383), Expect = 5e-36
Identities = 63/101 (62%), Positives = 79/101 (77%)
Frame = -2
Query: 635 FESVNDVTVMLCGHTIHKSCLNEMREHFQYACPLCSKSVCDMSKVWEKLDLEIAATPMPE 456
F+S D+TV+ CGHT+H C +M H +Y CP+CSKS+CDMS +W+KLD E+AA PMP+
Sbjct: 154 FDSTRDITVLRCGHTMHLECTKDMGLHNRYTCPVCSKSICDMSNLWKKLDEEVAAYPMPK 213
Query: 455 PYLNKMVWILCNDCGKTSQVRFHLVAQKCMNCKSYNTRQTR 333
Y NKMVWILCNDCG + VRFHL+A KC +C SYNTRQT+
Sbjct: 214 LYENKMVWILCNDCGSNTNVRFHLIAHKCSSCGSYNTRQTQ 254
>dbj|BAB68060.1| putative PGPD14 protein (pollen germination related protein) [Oryza
sativa (japonica cultivar-group)]
Length = 299
Score = 148 bits (373), Expect = 7e-35
Identities = 68/99 (68%), Positives = 78/99 (78%)
Frame = -2
Query: 635 FESVNDVTVMLCGHTIHKSCLNEMREHFQYACPLCSKSVCDMSKVWEKLDLEIAATPMPE 456
FES NDV+V+ CGHTIH CL EM EH Q+ACPLCSKSVCDMSK WE+LD E+A + +
Sbjct: 202 FESTNDVSVLPCGHTIHVKCLREMEEHCQFACPLCSKSVCDMSKAWERLDEELAT--ISD 259
Query: 455 PYLNKMVWILCNDCGKTSQVRFHLVAQKCMNCKSYNTRQ 339
NKMV ILCNDCG TS+V+FHL+A KC CKSYNTRQ
Sbjct: 260 TCDNKMVRILCNDCGATSEVQFHLIAHKCQKCKSYNTRQ 298
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 560,751,434
Number of Sequences: 1393205
Number of extensions: 12444070
Number of successful extensions: 32225
Number of sequences better than 10.0: 127
Number of HSP's better than 10.0 without gapping: 30062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32133
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26439068301
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
