Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000342A_C01 KMC000342A_c01
(712 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB92475.1| IAA25 [Arabidopsis thaliana] 80 3e-14
ref|NP_568400.1| auxin response transcription factor (ARF7); pro... 80 3e-14
gb|AAD04807.1| BIPOSTO [Arabidopsis thaliana] 80 3e-14
gb|AAL85006.1| unknown protein [Arabidopsis thaliana] 80 3e-14
gb|AAD02218.1| auxin response factor 7 [Arabidopsis thaliana] 80 3e-14
>gb|AAB92475.1| IAA25 [Arabidopsis thaliana]
Length = 476
Score = 80.1 bits (196), Expect = 3e-14
Identities = 37/48 (77%), Positives = 39/48 (81%)
Frame = -3
Query: 710 LSYTEVQQMSLDGDLGNVPIPNQACSGTDSGNAWRGPYDDNSAASFNR 567
LS EVQQMSLDG+ VP+ NQACSG DSGNAWRG YDDNSA SFNR
Sbjct: 429 LSSAEVQQMSLDGNFAGVPVTNQACSGGDSGNAWRGHYDDNSATSFNR 476
>ref|NP_568400.1| auxin response transcription factor (ARF7); protein id: At5g20730.1,
supported by cDNA: gi_4103242 [Arabidopsis thaliana]
gi|8071650|gb|AAF71831.1|AF186466_1 non-phototropic
hypocotyl 4 [Arabidopsis thaliana]
Length = 1165
Score = 80.1 bits (196), Expect = 3e-14
Identities = 37/48 (77%), Positives = 39/48 (81%)
Frame = -3
Query: 710 LSYTEVQQMSLDGDLGNVPIPNQACSGTDSGNAWRGPYDDNSAASFNR 567
LS EVQQMSLDG+ VP+ NQACSG DSGNAWRG YDDNSA SFNR
Sbjct: 1118 LSSAEVQQMSLDGNFAGVPVTNQACSGGDSGNAWRGHYDDNSATSFNR 1165
>gb|AAD04807.1| BIPOSTO [Arabidopsis thaliana]
Length = 1165
Score = 80.1 bits (196), Expect = 3e-14
Identities = 37/48 (77%), Positives = 39/48 (81%)
Frame = -3
Query: 710 LSYTEVQQMSLDGDLGNVPIPNQACSGTDSGNAWRGPYDDNSAASFNR 567
LS EVQQMSLDG+ VP+ NQACSG DSGNAWRG YDDNSA SFNR
Sbjct: 1118 LSSAEVQQMSLDGNFAGVPVTNQACSGGDSGNAWRGHYDDNSATSFNR 1165
>gb|AAL85006.1| unknown protein [Arabidopsis thaliana]
Length = 1045
Score = 80.1 bits (196), Expect = 3e-14
Identities = 37/48 (77%), Positives = 39/48 (81%)
Frame = -3
Query: 710 LSYTEVQQMSLDGDLGNVPIPNQACSGTDSGNAWRGPYDDNSAASFNR 567
LS EVQQMSLDG+ VP+ NQACSG DSGNAWRG YDDNSA SFNR
Sbjct: 998 LSSAEVQQMSLDGNFAGVPVTNQACSGGDSGNAWRGHYDDNSATSFNR 1045
>gb|AAD02218.1| auxin response factor 7 [Arabidopsis thaliana]
Length = 1164
Score = 80.1 bits (196), Expect = 3e-14
Identities = 37/48 (77%), Positives = 39/48 (81%)
Frame = -3
Query: 710 LSYTEVQQMSLDGDLGNVPIPNQACSGTDSGNAWRGPYDDNSAASFNR 567
LS EVQQMSLDG+ VP+ NQACSG DSGNAWRG YDDNSA SFNR
Sbjct: 1117 LSSAEVQQMSLDGNFAGVPVTNQACSGGDSGNAWRGHYDDNSATSFNR 1164
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 607,775,188
Number of Sequences: 1393205
Number of extensions: 12920206
Number of successful extensions: 30552
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 29908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30547
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32654539052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
