Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000307A_C01 KMC000307A_c01
(471 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB11268.1| emb|CAB62440.1~gene_id:MCD7.16~similar to unknow... 33 1.1
ref|NP_177996.1| hypothetical protein; protein id: At1g78750.1 [... 30 9.7
>dbj|BAB11268.1| emb|CAB62440.1~gene_id:MCD7.16~similar to unknown protein
[Arabidopsis thaliana]
Length = 450
Score = 33.5 bits (75), Expect = 1.1
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = -2
Query: 461 EFQFARHVMQNGRSLKKMTTCSGDFINQQGRLELIEKLSSCTRHSATCELYF 306
E + + +NG LKK T + I+ +LE++ +LS +R S C+L F
Sbjct: 398 EKELVGFIFRNGSLLKKATIIPPNSIDSDTKLEMLMELSLSSRRSPICQLEF 449
>ref|NP_177996.1| hypothetical protein; protein id: At1g78750.1 [Arabidopsis
thaliana] gi|25406566|pir||E96816 hypothetical protein
F9K20.21 [imported] - Arabidopsis thaliana
gi|3834319|gb|AAC83035.1| Similar to gi|2244754 heat
shock transcription factor HSF30 homolog from
Arabidopsis thaliana chromosome 4 contig gb|Z97335
Length = 458
Score = 30.4 bits (67), Expect = 9.7
Identities = 13/50 (26%), Positives = 31/50 (62%)
Frame = -2
Query: 461 EFQFARHVMQNGRSLKKMTTCSGDFINQQGRLELIEKLSSCTRHSATCEL 312
E + ++++N LKK+T C D I ++ + ++++L++ R S+ C++
Sbjct: 407 EMKLVSYLLENSTILKKLTLCLDDSIKKEESV-ILKELNTIPRLSSACQV 455
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 363,417,942
Number of Sequences: 1393205
Number of extensions: 6985138
Number of successful extensions: 14354
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14352
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12524054526
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
