Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000306A_C01 KMC000306A_c01
(575 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_810561.1| putative glycosyltransferase [Bacteroides theta... 34 1.2
gb|AAG43860.1|AF213479_1 acyl-ACP thioesterase [Iris tectorum] 34 1.5
gb|AAG43858.1|AF213477_1 acyl-ACP thioesterase [Iris germanica] 33 3.4
ref|NP_627679.1| putative short-chain dehydrogenase [Streptomyce... 31 9.8
>ref|NP_810561.1| putative glycosyltransferase [Bacteroides thetaiotaomicron
VPI-5482] gi|29338956|gb|AAO76755.1| putative
glycosyltransferase [Bacteroides thetaiotaomicron
VPI-5482]
Length = 330
Score = 34.3 bits (77), Expect = 1.2
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = +3
Query: 498 KANIIHN--NHYRFPYSGMSWGWRVLTW 575
K N++++ N Y F YSGMSW W++ W
Sbjct: 279 KRNMLYSSANRYIFSYSGMSWYWKIALW 306
>gb|AAG43860.1|AF213479_1 acyl-ACP thioesterase [Iris tectorum]
Length = 426
Score = 33.9 bits (76), Expect = 1.5
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Frame = -2
Query: 475 SQPVPQVGAHP--SSTIEFE---GADECLSRLSSIALNCSDGADMICFHSQHYL 329
S P+ + +H S T+E+ G D L L+S++ NCSDG++ + QH L
Sbjct: 345 SAPISILESHELASMTLEYRRECGRDSVLQSLTSVSNNCSDGSEELPIECQHLL 398
>gb|AAG43858.1|AF213477_1 acyl-ACP thioesterase [Iris germanica]
Length = 425
Score = 32.7 bits (73), Expect = 3.4
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Frame = -2
Query: 475 SQPVPQVGAHP--SSTIEFE---GADECLSRLSSIALNCSDGADMICFHSQHYL 329
S P+ + +H S T+E+ G D L L+S++ NC+DG++ + QH L
Sbjct: 344 SAPISILESHELASMTLEYRRECGRDSVLQSLTSVSNNCTDGSEELPIECQHLL 397
>ref|NP_627679.1| putative short-chain dehydrogenase [Streptomyces coelicolor A3(2)]
gi|6469463|emb|CAB61800.1| putative short-chain
dehydrogenase [Streptomyces coelicolor A3(2)]
Length = 251
Score = 31.2 bits (69), Expect = 9.8
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -3
Query: 309 IPVGRWGGP*DVSQLSCFTSS 247
IP GRWGGP DV ++ F +S
Sbjct: 211 IPAGRWGGPDDVGDVAVFLAS 231
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 496,546,204
Number of Sequences: 1393205
Number of extensions: 10185523
Number of successful extensions: 24422
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 23866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24419
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
