Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000305A_C01 KMC000305A_c01
(801 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9FVI1|ADF2_PETHY Actin-depolymerizing factor 2 (ADF 2) gi|10... 196 3e-49
pir||T47540 actin depolymerizing factor 2 - Arabidopsis thaliana... 191 1e-47
ref|NP_566882.1| actin depolymerizing factor 2 (ADF2); protein i... 191 1e-47
ref|NP_568915.1| actin depolymerizing factor 3 - like protein; p... 191 1e-47
gb|AAD51856.1|AF179295_1 putative actin depolymerizing factor [M... 183 2e-45
>sp|Q9FVI1|ADF2_PETHY Actin-depolymerizing factor 2 (ADF 2)
gi|10441258|gb|AAG16974.1|AF183904_1
actin-depolymerizing factor 2 [Petunia x hybrida]
gi|14906210|gb|AAK72616.1| actin-depolymerizing factor 2
[Petunia x hybrida]
Length = 143
Score = 196 bits (498), Expect = 3e-49
Identities = 95/119 (79%), Positives = 108/119 (89%), Gaps = 2/119 (1%)
Frame = -1
Query: 801 FMELETNRTYRFIVYKIEDKQ--VLVEKLGEPGPGYEDFTANLPADECRYAVYDFEYLTE 628
F+EL+ RTYRFI+YKIE+KQ V+VEKLGEP YEDFTA LPADECRYAVYDF+++T+
Sbjct: 18 FLELKAKRTYRFIIYKIEEKQKEVVVEKLGEPTESYEDFTAGLPADECRYAVYDFDFMTK 77
Query: 627 GNVPQSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQIELQATDPTEMGLDVFKS 451
N +SRIFFIAWSPDT+RVRSKMIYASSKDRFKRELDGIQ+ELQATDPTEMGLDVF+S
Sbjct: 78 ENHQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVFRS 136
>pir||T47540 actin depolymerizing factor 2 - Arabidopsis thaliana
gi|7339501|emb|CAB82824.1| actin depolymerizing factor 2
(ADF2) [Arabidopsis thaliana]
Length = 130
Score = 191 bits (485), Expect = 1e-47
Identities = 89/117 (76%), Positives = 104/117 (88%)
Frame = -1
Query: 801 FMELETNRTYRFIVYKIEDKQVLVEKLGEPGPGYEDFTANLPADECRYAVYDFEYLTEGN 622
FMEL+ RT+R IVYKIEDKQV+VEKLGEP Y+DF A+LPAD+CRY +YDF+++T N
Sbjct: 11 FMELKAKRTFRTIVYKIEDKQVIVEKLGEPEQSYDDFAASLPADDCRYCIYDFDFVTAEN 70
Query: 621 VPQSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQIELQATDPTEMGLDVFKS 451
+S+IFFIAWSPDT++VR KMIYASSKDRFKRELDGIQ+ELQATDPTEMGLDVFKS
Sbjct: 71 CQKSKIFFIAWSPDTAKVRDKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVFKS 127
>ref|NP_566882.1| actin depolymerizing factor 2 (ADF2); protein id: At3g46000.1,
supported by cDNA: 99657., supported by cDNA:
gi_13877562, supported by cDNA: gi_1408472, supported by
cDNA: gi_14423375 [Arabidopsis thaliana]
gi|17366516|sp|Q39251|ADF2_ARATH Actin-depolymerizing
factor 2 (ADF-2) (AtADF2) gi|1408473|gb|AAB03697.1|
actin depolymerizing factor 2
gi|13877563|gb|AAK43859.1|AF370482_1 actin
depolymerizing factor 2; ADF2 [Arabidopsis thaliana]
gi|14423376|gb|AAK62370.1|AF386925_1 actin
depolymerizing factor 2 [Arabidopsis thaliana]
gi|17978751|gb|AAL47369.1| actin depolymerizing factor 2
(ADF2) [Arabidopsis thaliana] gi|23198338|gb|AAN15696.1|
actin depolymerizing factor 2 [Arabidopsis thaliana]
Length = 137
Score = 191 bits (485), Expect = 1e-47
Identities = 89/117 (76%), Positives = 104/117 (88%)
Frame = -1
Query: 801 FMELETNRTYRFIVYKIEDKQVLVEKLGEPGPGYEDFTANLPADECRYAVYDFEYLTEGN 622
FMEL+ RT+R IVYKIEDKQV+VEKLGEP Y+DF A+LPAD+CRY +YDF+++T N
Sbjct: 18 FMELKAKRTFRTIVYKIEDKQVIVEKLGEPEQSYDDFAASLPADDCRYCIYDFDFVTAEN 77
Query: 621 VPQSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQIELQATDPTEMGLDVFKS 451
+S+IFFIAWSPDT++VR KMIYASSKDRFKRELDGIQ+ELQATDPTEMGLDVFKS
Sbjct: 78 CQKSKIFFIAWSPDTAKVRDKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVFKS 134
>ref|NP_568915.1| actin depolymerizing factor 3 - like protein; protein id:
At5g59880.1, supported by cDNA: 20973., supported by
cDNA: gi_13430513, supported by cDNA: gi_15215611,
supported by cDNA: gi_4185508 [Arabidopsis thaliana]
gi|17367315|sp|Q9ZSK4|ADF3_ARATH Actin-depolymerizing
factor 3 (ADF 3) (AtADF3) gi|4185509|gb|AAD09109.1|
actin depolymerizing factor 3 [Arabidopsis thaliana]
gi|9757909|dbj|BAB08356.1| actin depolymerizing factor 3
[Arabidopsis thaliana]
gi|13430514|gb|AAK25879.1|AF360169_1 putative actin
depolymerizing factor 3 [Arabidopsis thaliana]
gi|15215612|gb|AAK91351.1| AT5g59880/mmn10_100
[Arabidopsis thaliana] gi|15810613|gb|AAL07194.1|
putative actin depolymerizing factor 3 [Arabidopsis
thaliana] gi|20334866|gb|AAM16189.1| AT5g59880/mmn10_100
[Arabidopsis thaliana] gi|21554197|gb|AAM63276.1| actin
depolymerizing factor 3-like protein [Arabidopsis
thaliana]
Length = 139
Score = 191 bits (484), Expect = 1e-47
Identities = 90/119 (75%), Positives = 108/119 (90%), Gaps = 2/119 (1%)
Frame = -1
Query: 801 FMELETNRTYRFIVYKIED--KQVLVEKLGEPGPGYEDFTANLPADECRYAVYDFEYLTE 628
FMEL+T RT+RFI+YKIE+ KQV+VEK+GEPG +ED A+LPADECRYA++DF++++
Sbjct: 18 FMELKTKRTHRFIIYKIEELQKQVIVEKIGEPGQTHEDLAASLPADECRYAIFDFDFVSS 77
Query: 627 GNVPQSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQIELQATDPTEMGLDVFKS 451
VP+SRIFF+AWSPDT+RVRSKMIYASSKDRFKRELDGIQ+ELQATDPTEM LDVFKS
Sbjct: 78 EGVPRSRIFFVAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFKS 136
>gb|AAD51856.1|AF179295_1 putative actin depolymerizing factor [Malus x domestica]
Length = 129
Score = 183 bits (465), Expect = 2e-45
Identities = 87/119 (73%), Positives = 105/119 (88%), Gaps = 2/119 (1%)
Frame = -1
Query: 801 FMELETNRTYRFIVYKIEDK--QVLVEKLGEPGPGYEDFTANLPADECRYAVYDFEYLTE 628
F+EL+ RTYRFIV+KI++K +V+VEKLGEP YEDFTANLP +ECRYAVYDF+++T
Sbjct: 8 FLELKAKRTYRFIVFKIDEKKNEVIVEKLGEPAESYEDFTANLPDNECRYAVYDFDFVTV 67
Query: 627 GNVPQSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQIELQATDPTEMGLDVFKS 451
N +SRIFF+ WSPDT+RVR+KMIYASSKDRFKRELDGIQ+ELQATDP+E+GLDV KS
Sbjct: 68 ENCHKSRIFFVGWSPDTARVRNKMIYASSKDRFKRELDGIQVELQATDPSEIGLDVIKS 126
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 688,074,707
Number of Sequences: 1393205
Number of extensions: 14787196
Number of successful extensions: 32232
Number of sequences better than 10.0: 139
Number of HSP's better than 10.0 without gapping: 31031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32136
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 40616159090
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
