Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000304A_C01 KMC000304A_c01
(800 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195281.1| hypothetical protein; protein id: At4g35560.1 [... 86 6e-16
ref|NP_196176.1| putative protein; protein id: At5g05570.1 [Arab... 50 4e-05
ref|XP_113678.2| similar to cDNA sequence AF104415; gene trap lo... 34 2.8
ref|NP_067487.1| cDNA sequence AF104415; gene trap locus-13; gen... 34 2.8
ref|XP_203176.1| cDNA sequence AF104415 [Mus musculus] 34 2.8
>ref|NP_195281.1| hypothetical protein; protein id: At4g35560.1 [Arabidopsis thaliana]
gi|7452454|pir||T04661 hypothetical protein F8D20.70 -
Arabidopsis thaliana gi|3367574|emb|CAA20026.1|
hypothetical protein [Arabidopsis thaliana]
gi|7270507|emb|CAB80272.1| hypothetical protein
[Arabidopsis thaliana]
Length = 917
Score = 85.9 bits (211), Expect = 6e-16
Identities = 46/71 (64%), Positives = 57/71 (79%), Gaps = 1/71 (1%)
Frame = -1
Query: 785 NE*QQHEKTGE-VDQIKKKYGFSSSSDETGVANLAKSKLQENTRKLEGIRLRTTEMQDTA 609
N+ + EK G VDQIKKKYGF+SS DE G A +A+SKLQ+N +KL+GI LRTTEM+DTA
Sbjct: 836 NDEKHEEKNGATVDQIKKKYGFTSS-DEMGAAKMAQSKLQDNLKKLQGISLRTTEMEDTA 894
Query: 608 KSFSSLPKQVL 576
KSFSS K++L
Sbjct: 895 KSFSSTAKELL 905
>ref|NP_196176.1| putative protein; protein id: At5g05570.1 [Arabidopsis thaliana]
gi|10178134|dbj|BAB11546.1|
gene_id:MOP10.11~pir||T04661~similar to unknown protein
[Arabidopsis thaliana]
Length = 1124
Score = 50.1 bits (118), Expect = 4e-05
Identities = 26/64 (40%), Positives = 40/64 (61%)
Frame = -1
Query: 764 KTGEVDQIKKKYGFSSSSDETGVANLAKSKLQENTRKLEGIRLRTTEMQDTAKSFSSLPK 585
KT VD+IK KY + + + +A+ AK KL E KLE I RT E+QD A++F+S+
Sbjct: 1053 KTRTVDEIKSKY--RKAGETSAIASQAKDKLHERGEKLERISQRTAELQDNAENFASMAH 1110
Query: 584 QVLR 573
++ +
Sbjct: 1111 ELAK 1114
>ref|XP_113678.2| similar to cDNA sequence AF104415; gene trap locus-13; gene trap
locus 1-13 [Mus musculus] [Homo sapiens]
Length = 1436
Score = 33.9 bits (76), Expect = 2.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 664 TQESWRVSGYVLQRCKIQQNHFHHC 590
T E+WR+ L+R K+Q N +HHC
Sbjct: 1285 TDEAWRLLSTYLERYKVQNNLYHHC 1309
>ref|NP_067487.1| cDNA sequence AF104415; gene trap locus-13; gene trap locus 1-13;
nucleoporin 160kDa [Mus musculus]
gi|13124660|sp|Q9Z0W3|Y197_MOUSE Protein KIAA0197
(GTL-13) gi|5292163|gb|AAD17922.2| gene trap locus-13
[Mus musculus]
Length = 1402
Score = 33.9 bits (76), Expect = 2.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 664 TQESWRVSGYVLQRCKIQQNHFHHC 590
T E+WR+ L+R K+Q N +HHC
Sbjct: 1251 TDEAWRLLSTYLERYKVQNNLYHHC 1275
>ref|XP_203176.1| cDNA sequence AF104415 [Mus musculus]
Length = 336
Score = 33.9 bits (76), Expect = 2.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 664 TQESWRVSGYVLQRCKIQQNHFHHC 590
T E+WR+ L+R K+Q N +HHC
Sbjct: 185 TDEAWRLLSTYLERYKVQNNLYHHC 209
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 600,181,483
Number of Sequences: 1393205
Number of extensions: 11902064
Number of successful extensions: 24402
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 23656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24385
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 40616159090
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
