Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000303A_C01 KMC000303A_c01
(715 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193014.2| auxilin-like protein; protein id: At4g12780.1, ... 147 1e-34
pir||T06636 hypothetical protein T20K18.130 - Arabidopsis thalia... 147 1e-34
ref|NP_193013.1| auxilin-like protein; protein id: At4g12770.1 [... 145 4e-34
ref|NP_173585.1| auxilin-like protein; protein id: At1g21660.1, ... 125 4e-28
dbj|BAB19409.1| P0458A05.18 [Oryza sativa (japonica cultivar-gro... 122 5e-27
>ref|NP_193014.2| auxilin-like protein; protein id: At4g12780.1, supported by cDNA:
gi_19698974 [Arabidopsis thaliana]
gi|19698975|gb|AAL91223.1| auxilin-like protein
[Arabidopsis thaliana]
Length = 485
Score = 147 bits (371), Expect = 1e-34
Identities = 68/72 (94%), Positives = 70/72 (96%)
Frame = -1
Query: 715 YVLWPECGWQPVSLTDLITAASVKKAYRKATLCIHPDKVQQKGATLQQKYIAEKVFDLLK 536
YVLWPECGWQPVSLTDLITAASVKK YRKATLCIHPDKVQQKGA LQQKYIAEKVFD+LK
Sbjct: 414 YVLWPECGWQPVSLTDLITAASVKKVYRKATLCIHPDKVQQKGANLQQKYIAEKVFDMLK 473
Query: 535 ESWNKFNSEELF 500
E+WNKFNSEELF
Sbjct: 474 EAWNKFNSEELF 485
>pir||T06636 hypothetical protein T20K18.130 - Arabidopsis thaliana
gi|4586254|emb|CAB40995.1| auxilin-like protein
[Arabidopsis thaliana] gi|7267979|emb|CAB78320.1|
auxilin-like protein [Arabidopsis thaliana]
Length = 924
Score = 147 bits (371), Expect = 1e-34
Identities = 68/72 (94%), Positives = 70/72 (96%)
Frame = -1
Query: 715 YVLWPECGWQPVSLTDLITAASVKKAYRKATLCIHPDKVQQKGATLQQKYIAEKVFDLLK 536
YVLWPECGWQPVSLTDLITAASVKK YRKATLCIHPDKVQQKGA LQQKYIAEKVFD+LK
Sbjct: 853 YVLWPECGWQPVSLTDLITAASVKKVYRKATLCIHPDKVQQKGANLQQKYIAEKVFDMLK 912
Query: 535 ESWNKFNSEELF 500
E+WNKFNSEELF
Sbjct: 913 EAWNKFNSEELF 924
>ref|NP_193013.1| auxilin-like protein; protein id: At4g12770.1 [Arabidopsis thaliana]
gi|7487262|pir||T06635 hypothetical protein T20K18.120 -
Arabidopsis thaliana gi|4586253|emb|CAB40994.1|
auxilin-like protein [Arabidopsis thaliana]
gi|7267978|emb|CAB78319.1| auxilin-like protein
[Arabidopsis thaliana]
Length = 909
Score = 145 bits (367), Expect = 4e-34
Identities = 67/72 (93%), Positives = 69/72 (95%)
Frame = -1
Query: 715 YVLWPECGWQPVSLTDLITAASVKKAYRKATLCIHPDKVQQKGATLQQKYIAEKVFDLLK 536
YVLWPECGWQPVSLTDLIT ASVKK YRKATLCIHPDKVQQKGA LQQKYIAEKVFD+LK
Sbjct: 838 YVLWPECGWQPVSLTDLITGASVKKVYRKATLCIHPDKVQQKGANLQQKYIAEKVFDMLK 897
Query: 535 ESWNKFNSEELF 500
E+WNKFNSEELF
Sbjct: 898 EAWNKFNSEELF 909
>ref|NP_173585.1| auxilin-like protein; protein id: At1g21660.1, supported by cDNA:
gi_20466222 [Arabidopsis thaliana]
gi|25518709|pir||G86349 hypothetical protein F8K7.8 -
Arabidopsis thaliana gi|5263317|gb|AAD41419.1|AC007727_8
EST gb|AA042488 comes from this gene. [Arabidopsis
thaliana] gi|20466223|gb|AAM20429.1| auxilin-like
protein [Arabidopsis thaliana]
Length = 523
Score = 125 bits (315), Expect = 4e-28
Identities = 56/70 (80%), Positives = 65/70 (92%)
Frame = -1
Query: 712 VLWPECGWQPVSLTDLITAASVKKAYRKATLCIHPDKVQQKGATLQQKYIAEKVFDLLKE 533
VLWP CGW+ VS+TDLIT+++VKK YRKATL +HPDKVQQKGATL+QKYIAEKVFD+LKE
Sbjct: 453 VLWPGCGWEAVSITDLITSSAVKKVYRKATLYVHPDKVQQKGATLEQKYIAEKVFDILKE 512
Query: 532 SWNKFNSEEL 503
+WNKFN EEL
Sbjct: 513 AWNKFNKEEL 522
>dbj|BAB19409.1| P0458A05.18 [Oryza sativa (japonica cultivar-group)]
gi|15408674|dbj|BAB64083.1| B1157F09.8 [Oryza sativa
(japonica cultivar-group)]
Length = 755
Score = 122 bits (306), Expect = 5e-27
Identities = 57/61 (93%), Positives = 59/61 (96%)
Frame = -1
Query: 715 YVLWPECGWQPVSLTDLITAASVKKAYRKATLCIHPDKVQQKGATLQQKYIAEKVFDLLK 536
YVLWPECGW+PVSLTDLITAASVKK YRKATLCIHPDKVQQKGA LQQKYIAEKVFDLLK
Sbjct: 660 YVLWPECGWRPVSLTDLITAASVKKEYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLK 719
Query: 535 E 533
+
Sbjct: 720 D 720
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 626,934,866
Number of Sequences: 1393205
Number of extensions: 13598345
Number of successful extensions: 30852
Number of sequences better than 10.0: 135
Number of HSP's better than 10.0 without gapping: 29736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30813
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32936043699
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
