Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000302A_C02 KMC000302A_c02
(753 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177278.1| putative UDP-glucose:glycoprotein glucosyltrans... 38 0.18
ref|NP_240215.1| TldD protein [Buchnera sp. APS] gi|11387176|sp|... 33 3.4
gb|ZP_00054104.1| hypothetical protein [Magnetospirillum magneto... 32 7.5
ref|NP_660726.1| tldd protein [Buchnera aphidicola str. Sg (Schi... 32 9.8
>ref|NP_177278.1| putative UDP-glucose:glycoprotein glucosyltransferase; protein id:
At1g71220.1 [Arabidopsis thaliana]
gi|25406106|pir||G96736 hypothetical protein F3I17.13
[imported] - Arabidopsis thaliana
gi|12323829|gb|AAG51883.1|AC016162_4 putative
UDP-glucose:glycoprotein glucosyltransferase;
101200-91134 [Arabidopsis thaliana]
Length = 1674
Score = 37.7 bits (86), Expect = 0.18
Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 8/50 (16%)
Frame = -2
Query: 749 EASRFTARILGDDQE-----PTPSPDRSKDLTSED---SLKEDLESKAEL 624
EA +FTA+ILG+D E P+ D+ L S D ++DLESKAEL
Sbjct: 1625 EARKFTAKILGEDVELNEPVAAPATDKPNPLPSNDISEDTEQDLESKAEL 1674
>ref|NP_240215.1| TldD protein [Buchnera sp. APS] gi|11387176|sp|P57478|TLDD_BUCAI
TldD protein homolog gi|25305203|pir||E84976 tldD
protein [imported] - Buchnera sp. (strain APS)
gi|10039067|dbj|BAB13101.1| tldD protein [Buchnera
aphidicola str. APS (Acyrthosiphon pisum)]
Length = 483
Score = 33.5 bits (75), Expect = 3.4
Identities = 19/56 (33%), Positives = 28/56 (49%)
Frame = +1
Query: 241 IYLALLNSSTPPYCIRLFLKRTKMGVGWPRYHIHEIRWHGYQSENGRKSISEYTNI 408
+ +ALLN S+ F +G GWP +HE HG + + RK S +TN+
Sbjct: 233 VRIALLNLSSKEALSGTF--PVVLGSGWPGVLLHEAIGHGLEGDFNRKGTSIFTNM 286
>gb|ZP_00054104.1| hypothetical protein [Magnetospirillum magnetotacticum]
Length = 500
Score = 32.3 bits (72), Expect = 7.5
Identities = 13/31 (41%), Positives = 18/31 (57%)
Frame = +1
Query: 310 MGVGWPRYHIHEIRWHGYQSENGRKSISEYT 402
+G GWP +HE HG + + RKS S +T
Sbjct: 270 LGPGWPGVMLHEAVGHGLEGDFNRKSTSAFT 300
>ref|NP_660726.1| tldd protein [Buchnera aphidicola str. Sg (Schizaphis graminum)]
gi|25009477|sp|Q8K9F2|TLDD_BUCAP TldD protein homolog
gi|21623295|gb|AAM67937.1| tldd protein [Buchnera
aphidicola str. Sg (Schizaphis graminum)]
Length = 483
Score = 32.0 bits (71), Expect = 9.8
Identities = 24/90 (26%), Positives = 40/90 (43%)
Frame = +1
Query: 139 GRKTNQTKESFLLIACLDQLFFQLNMK*NYTITHIYLALLNSSTPPYCIRLFLKRTKMGV 318
GR ++ ++ D F + N +T + +ALLN S+ F +G
Sbjct: 200 GRSGGGSRTNYSFFITQDDCFGE-NRIDYWTKEAVRIALLNLSSHEAPSGTF--PVVLGS 256
Query: 319 GWPRYHIHEIRWHGYQSENGRKSISEYTNI 408
GWP +HE HG + + R+ S +TN+
Sbjct: 257 GWPGVLLHEAVGHGLEGDFNRRGTSIFTNM 286
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 633,827,065
Number of Sequences: 1393205
Number of extensions: 13859016
Number of successful extensions: 29325
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 28342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29319
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36595604110
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
