Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000301A_C01 KMC000301A_c01
(530 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201026.1| putative protein; protein id: At5g62200.1 [Arab... 108 3e-23
dbj|BAA97184.1| contains similarity to embryo-specific protein 3... 108 3e-23
ref|NP_181678.1| unknown protein; protein id: At2g41470.1 [Arabi... 101 5e-21
dbj|BAC42492.1| embryo-specific protein like [Arabidopsis thaliana] 86 2e-16
ref|NP_201027.1| embryo-specific protein - like; protein id: At5... 86 2e-16
>ref|NP_201026.1| putative protein; protein id: At5g62200.1 [Arabidopsis thaliana]
Length = 190
Score = 108 bits (271), Expect = 3e-23
Identities = 48/99 (48%), Positives = 63/99 (63%)
Frame = -2
Query: 529 SPAYTTDQISLLFGDAHGHQAYIARLDDPASGTFPPCAIDVFDVIGPCLGQICHLYLYRS 350
S YT DQIS+ FGD +G+Q Y RLDDP++ TF C+ D F + GPC QIC++YLYRS
Sbjct: 60 STRYTRDQISVAFGDGYGNQIYAPRLDDPSTKTFEQCSSDTFQINGPCTYQICYVYLYRS 119
Query: 349 GSHGWVPERVIVDDYYYGPIAFEYHLDIPEGGGLGFNYC 233
G GW+P V + + + F Y+ +PE GFNYC
Sbjct: 120 GPDGWIPNTVKIYSHGSKAVTFPYNTYVPESVWYGFNYC 158
>dbj|BAA97184.1| contains similarity to embryo-specific protein 3~gene_id:MMI9.3
[Arabidopsis thaliana]
Length = 231
Score = 108 bits (271), Expect = 3e-23
Identities = 48/99 (48%), Positives = 63/99 (63%)
Frame = -2
Query: 529 SPAYTTDQISLLFGDAHGHQAYIARLDDPASGTFPPCAIDVFDVIGPCLGQICHLYLYRS 350
S YT DQIS+ FGD +G+Q Y RLDDP++ TF C+ D F + GPC QIC++YLYRS
Sbjct: 60 STRYTRDQISVAFGDGYGNQIYAPRLDDPSTKTFEQCSSDTFQINGPCTYQICYVYLYRS 119
Query: 349 GSHGWVPERVIVDDYYYGPIAFEYHLDIPEGGGLGFNYC 233
G GW+P V + + + F Y+ +PE GFNYC
Sbjct: 120 GPDGWIPNTVKIYSHGSKAVTFPYNTYVPESVWYGFNYC 158
>ref|NP_181678.1| unknown protein; protein id: At2g41470.1 [Arabidopsis thaliana]
gi|7487450|pir||T02442 hypothetical protein At2g41470
[imported] - Arabidopsis thaliana
gi|3241945|gb|AAC23732.1| unknown protein [Arabidopsis
thaliana]
Length = 365
Score = 101 bits (252), Expect = 5e-21
Identities = 44/99 (44%), Positives = 62/99 (62%)
Frame = -2
Query: 529 SPAYTTDQISLLFGDAHGHQAYIARLDDPASGTFPPCAIDVFDVIGPCLGQICHLYLYRS 350
S +YT D+IS+ FGD +G++ Y+ RLDDP+S TF C+ D + + GPC+ +C+LYL R
Sbjct: 60 SVSYTRDKISISFGDVYGNEVYVKRLDDPSSRTFEKCSSDTYKISGPCMRDVCYLYLLRQ 119
Query: 349 GSHGWVPERVIVDDYYYGPIAFEYHLDIPEGGGLGFNYC 233
GS GW PE V + + F Y+L +P GFN C
Sbjct: 120 GSDGWKPENVKIYGSSIRSVTFYYNLFLPNSVWYGFNVC 158
>dbj|BAC42492.1| embryo-specific protein like [Arabidopsis thaliana]
Length = 227
Score = 86.3 bits (212), Expect = 2e-16
Identities = 41/101 (40%), Positives = 59/101 (57%), Gaps = 2/101 (1%)
Frame = -2
Query: 529 SPAYTTDQISLLFGDAHGHQAYIARLDDPASGT--FPPCAIDVFDVIGPCLGQICHLYLY 356
SP ++ DQ+++ GDA +Q RLD P SG F C+ D F V G CL IC +Y+Y
Sbjct: 56 SPDWSRDQVTIALGDADDNQVVAPRLDKPLSGGGGFEKCSSDTFQVKGKCLNTICSVYIY 115
Query: 355 RSGSHGWVPERVIVDDYYYGPIAFEYHLDIPEGGGLGFNYC 233
RSG+ GW+PE V + + F+++ ++PE G NYC
Sbjct: 116 RSGTDGWIPETVEIYKEGSKSVKFDFNKNVPENIWYGNNYC 156
>ref|NP_201027.1| embryo-specific protein - like; protein id: At5g62210.1, supported
by cDNA: 28168. [Arabidopsis thaliana]
gi|8809634|dbj|BAA97185.1| contains similarity to
embryo-specific protein 3~gene_id:MMI9.4 [Arabidopsis
thaliana] gi|21555501|gb|AAM63873.1| embryo-specific
protein-like [Arabidopsis thaliana]
Length = 223
Score = 86.3 bits (212), Expect = 2e-16
Identities = 41/101 (40%), Positives = 59/101 (57%), Gaps = 2/101 (1%)
Frame = -2
Query: 529 SPAYTTDQISLLFGDAHGHQAYIARLDDPASGT--FPPCAIDVFDVIGPCLGQICHLYLY 356
SP ++ DQ+++ GDA +Q RLD P SG F C+ D F V G CL IC +Y+Y
Sbjct: 52 SPDWSRDQVTIALGDADDNQVVAPRLDKPLSGGGGFEKCSSDTFQVKGKCLNTICSVYIY 111
Query: 355 RSGSHGWVPERVIVDDYYYGPIAFEYHLDIPEGGGLGFNYC 233
RSG+ GW+PE V + + F+++ ++PE G NYC
Sbjct: 112 RSGTDGWIPETVEIYKEGSKSVKFDFNKNVPENIWYGNNYC 152
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,707,600
Number of Sequences: 1393205
Number of extensions: 11475105
Number of successful extensions: 47636
Number of sequences better than 10.0: 140
Number of HSP's better than 10.0 without gapping: 36216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42716
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
