Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000300A_C01 KMC000300A_c01
(600 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_192558.1| putative protein; protein id: At4g08180.1 [Arab... 83 2e-15
gb|AAM98072.1| AT4g08180/T12G13_20 [Arabidopsis thaliana] 83 2e-15
ref|NP_180659.1| putative oxysterol-binding protein; protein id:... 76 3e-13
ref|NP_568527.1| putative protein; protein id: At5g35560.1 [Arab... 62 6e-11
dbj|BAB08718.1| gb|AAD21756.1~gene_id:MOK9.21~strong similarity ... 62 6e-11
>ref|NP_192558.1| putative protein; protein id: At4g08180.1 [Arabidopsis thaliana]
gi|7486872|pir||T10545 hypothetical protein T12G13.20 -
Arabidopsis thaliana gi|5262191|emb|CAB45788.1| putative
protein [Arabidopsis thaliana]
gi|7267458|emb|CAB81154.1| putative protein [Arabidopsis
thaliana]
Length = 830
Score = 83.2 bits (204), Expect = 2e-15
Identities = 40/61 (65%), Positives = 50/61 (81%)
Frame = +3
Query: 402 DTRDILSTSSFKSNGSDHRVSSFSSDNEGFYAFESEEDVDPSIRNVGTNHPYVKRRRKLP 581
DTRD LS+SSFKS+GS R SSFSSD +GF ESE+D+DPSI+++G N+P VKRR+ LP
Sbjct: 371 DTRDFLSSSSFKSSGSGFRTSSFSSDEDGF---ESEDDIDPSIKSIGCNYPRVKRRKNLP 427
Query: 582 D 584
D
Sbjct: 428 D 428
>gb|AAM98072.1| AT4g08180/T12G13_20 [Arabidopsis thaliana]
Length = 814
Score = 83.2 bits (204), Expect = 2e-15
Identities = 40/61 (65%), Positives = 50/61 (81%)
Frame = +3
Query: 402 DTRDILSTSSFKSNGSDHRVSSFSSDNEGFYAFESEEDVDPSIRNVGTNHPYVKRRRKLP 581
DTRD LS+SSFKS+GS R SSFSSD +GF ESE+D+DPSI+++G N+P VKRR+ LP
Sbjct: 371 DTRDFLSSSSFKSSGSGFRTSSFSSDEDGF---ESEDDIDPSIKSIGCNYPRVKRRKNLP 427
Query: 582 D 584
D
Sbjct: 428 D 428
>ref|NP_180659.1| putative oxysterol-binding protein; protein id: At2g31020.1
[Arabidopsis thaliana] gi|25295692|pir||E84715 probable
oxysterol-binding protein [imported] - Arabidopsis
thaliana gi|3201627|gb|AAC20736.1| putative
oxysterol-binding protein [Arabidopsis thaliana]
Length = 760
Score = 76.3 bits (186), Expect = 3e-13
Identities = 41/64 (64%), Positives = 51/64 (79%), Gaps = 2/64 (3%)
Frame = +3
Query: 399 IDTRDILSTSSFKSNGSDHRVSSFSSDNEGFY-AFESE-EDVDPSIRNVGTNHPYVKRRR 572
+DT D LS+SSFKS GS R SSFSSD++G FESE +DVDPSI+ +G N+P+VKRR+
Sbjct: 321 MDTCDSLSSSSFKSIGSVFRTSSFSSDDDGLTNGFESENDDVDPSIKTIGFNYPHVKRRK 380
Query: 573 KLPD 584
KLPD
Sbjct: 381 KLPD 384
>ref|NP_568527.1| putative protein; protein id: At5g35560.1 [Arabidopsis thaliana]
Length = 750
Score = 61.6 bits (148), Expect(2) = 6e-11
Identities = 30/34 (88%), Positives = 31/34 (90%)
Frame = -2
Query: 401 NDDKVSLLLKESFIDSFPYRDRAFMKLFVDTQLF 300
N+DKVSLLLKESFIDSFP R R FMKLFVDTQLF
Sbjct: 703 NNDKVSLLLKESFIDSFPSRQRPFMKLFVDTQLF 736
Score = 26.9 bits (58), Expect(2) = 6e-11
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = -3
Query: 301 FAVHTDLVLSFLPK 260
F+VHTDLVLSF+ K
Sbjct: 736 FSVHTDLVLSFIQK 749
>dbj|BAB08718.1| gb|AAD21756.1~gene_id:MOK9.21~strong similarity to unknown protein
[Arabidopsis thaliana]
Length = 722
Score = 61.6 bits (148), Expect(2) = 6e-11
Identities = 30/34 (88%), Positives = 31/34 (90%)
Frame = -2
Query: 401 NDDKVSLLLKESFIDSFPYRDRAFMKLFVDTQLF 300
N+DKVSLLLKESFIDSFP R R FMKLFVDTQLF
Sbjct: 675 NNDKVSLLLKESFIDSFPSRQRPFMKLFVDTQLF 708
Score = 26.9 bits (58), Expect(2) = 6e-11
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = -3
Query: 301 FAVHTDLVLSFLPK 260
F+VHTDLVLSF+ K
Sbjct: 708 FSVHTDLVLSFIQK 721
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 507,885,168
Number of Sequences: 1393205
Number of extensions: 10745124
Number of successful extensions: 23627
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 22824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23614
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
