Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000299A_C02 KMC000299A_c02
(593 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB33421.1| putative senescence-associated protein [Pisum sa... 145 6e-42
ref|XP_236767.1| similar to putative senescence-associated prote... 78 7e-14
pir||F81738 hypothetical protein TC0114 [imported] - Chlamydia m... 51 1e-05
ref|NP_296498.2| hypothetical protein [Chlamydia muridarum] gi|1... 51 1e-05
ref|XP_227771.1| similar to putative senescence-associated prote... 45 7e-04
>dbj|BAB33421.1| putative senescence-associated protein [Pisum sativum]
Length = 282
Score = 145 bits (365), Expect(2) = 6e-42
Identities = 69/75 (92%), Positives = 70/75 (93%)
Frame = +3
Query: 369 SQRFLSY*VELLLRHYHQ*GKTNLSHDGLIPAHVPYGWVNNPTLGEFCFTMIGRADIEGS 548
+QRFLSY VELLLRH HQ GKTNLSHDGLIPAHVPY WVNNPTLGEFCFTMIGRADIEGS
Sbjct: 41 NQRFLSYYVELLLRHCHQWGKTNLSHDGLIPAHVPYWWVNNPTLGEFCFTMIGRADIEGS 100
Query: 549 TSNVAMNAWLPQASY 593
SNVAMNAWLPQASY
Sbjct: 101 KSNVAMNAWLPQASY 115
Score = 47.8 bits (112), Expect(2) = 6e-42
Identities = 24/32 (75%), Positives = 25/32 (78%)
Frame = +2
Query: 272 PDSDLEAFSHNPSAR*PSRPLAFQPSAMTKCA 367
PDSDLEAFSHNP+ PLAFQPSAMT CA
Sbjct: 10 PDSDLEAFSHNPT-HGSFAPLAFQPSAMTNCA 40
>ref|XP_236767.1| similar to putative senescence-associated protein [Pisum sativum]
[Rattus norvegicus]
Length = 125
Score = 78.2 bits (191), Expect = 7e-14
Identities = 35/38 (92%), Positives = 36/38 (94%)
Frame = +3
Query: 480 WVNNPTLGEFCFTMIGRADIEGSTSNVAMNAWLPQASY 593
WVNNPTLGEFCFTMIGRADIEGS S+VAMNAW PQASY
Sbjct: 27 WVNNPTLGEFCFTMIGRADIEGSKSDVAMNAWPPQASY 64
>pir||F81738 hypothetical protein TC0114 [imported] - Chlamydia muridarum
(strain Nigg)
Length = 122
Score = 50.8 bits (120), Expect = 1e-05
Identities = 27/51 (52%), Positives = 30/51 (57%)
Frame = +2
Query: 440 VSRRSNPSSRSLWVGEQSNTW*ILLHNDRKSRHRRINKQRRYERLAATSQL 592
VSRR PSSR+ +GEQ N W +L D SRHR RRYE L A S L
Sbjct: 52 VSRRFEPSSRTALIGEQPNPWDLLQPQDAMSRHRGAKPPRRYELLVAISLL 102
>ref|NP_296498.2| hypothetical protein [Chlamydia muridarum] gi|11282814|pir||G81737
hypothetical protein TC0130 [imported] - Chlamydia
muridarum (strain Nigg) gi|29251569|gb|AAF38993.2|
hypothetical protein [Chlamydia muridarum]
Length = 122
Score = 50.8 bits (120), Expect = 1e-05
Identities = 27/51 (52%), Positives = 30/51 (57%)
Frame = +2
Query: 440 VSRRSNPSSRSLWVGEQSNTW*ILLHNDRKSRHRRINKQRRYERLAATSQL 592
VSRR PSSR+ +GEQ N W +L D SRHR RRYE L A S L
Sbjct: 52 VSRRFEPSSRTALIGEQPNPWDLLQPQDAMSRHRGAKPPRRYELLVAISLL 102
>ref|XP_227771.1| similar to putative senescence-associated protein [Pisum sativum]
[Rattus norvegicus]
Length = 150
Score = 45.1 bits (105), Expect = 7e-04
Identities = 21/27 (77%), Positives = 22/27 (80%)
Frame = +3
Query: 513 FTMIGRADIEGSTSNVAMNAWLPQASY 593
F GRADIEGS S+VAMNAW PQASY
Sbjct: 43 FAASGRADIEGSKSDVAMNAWPPQASY 69
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 523,224,577
Number of Sequences: 1393205
Number of extensions: 11422922
Number of successful extensions: 27128
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 26147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27108
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
