Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000298A_C01 KMC000298A_c01
(735 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN03626.1|AF406702_1 BEL1-related homeotic protein 29 [Solan... 164 1e-39
gb|AAK43836.1|AF353094_1 BEL1-like homeodomain 1 [Arabidopsis th... 94 3e-18
ref|NP_181138.1| BEL1-like homeobox 1 protein (BLH1); protein id... 94 3e-18
gb|AAN03621.1|AF406697_1 BEL1-related homeotic protein 5 [Solanu... 57 2e-07
gb|AAN03622.1|AF406698_1 BEL1-related homeotic protein 11 [Solan... 42 0.009
>gb|AAN03626.1|AF406702_1 BEL1-related homeotic protein 29 [Solanum tuberosum]
Length = 567
Score = 164 bits (415), Expect = 1e-39
Identities = 95/163 (58%), Positives = 117/163 (71%), Gaps = 10/163 (6%)
Frame = -3
Query: 733 RNQEMMHSTNSVPSIDMDVKSNDANNEHLSMKFGDERQQGRDGYSFMGNQTNFMGGFGQY 554
RN EM+HS NS+PSI+MDVK N+ E +SMKFGD+RQ RDG+S MG NFMGGFG Y
Sbjct: 413 RNNEMLHSPNSIPSINMDVKPNE---EQMSMKFGDDRQD-RDGFSLMGGPMNFMGGFGAY 468
Query: 553 PIGDIGRFDAEQFTQRFSGNG-VSLTLGLD-----SLPGTHQTFL--PNQNIQLGRGLDI 398
PIG+I RF EQF+ +S +G VSLTLGL S+ TH +FL P QNIQ+G
Sbjct: 469 PIGEIARFSTEQFSAPYSTSGTVSLTLGLPHNENLSMSATHHSFLPIPTQNIQIG----- 523
Query: 397 SEPN-EFDAMNT-SSPHSSAAAYETISMQNPKRFAAQLLPDFV 275
SEPN EF ++NT +S HS+++ YET ++QN KRFAA LLPDFV
Sbjct: 524 SEPNHEFGSLNTPTSAHSTSSVYETFNIQNRKRFAAPLLPDFV 566
>gb|AAK43836.1|AF353094_1 BEL1-like homeodomain 1 [Arabidopsis thaliana]
Length = 680
Score = 93.6 bits (231), Expect = 3e-18
Identities = 69/157 (43%), Positives = 92/157 (57%), Gaps = 22/157 (14%)
Frame = -3
Query: 679 VKSNDANNEHLSMKFGDERQQGRD--GYSFMGNQTNFMGGFGQYPIGDIGRFDA----EQ 518
+ ++ ++NE L+MK +ERQ R GY FMGN FGQY + ++ RFD E
Sbjct: 530 INADFSSNEKLTMKILEERQGIRSDGGYPFMGN-------FGQYQMDEMSRFDVVSDQEL 582
Query: 517 FTQRFSGN--GVSLTLGL---DSLPGT-HQTFLPNQN-IQLGRGLDISEPNEFD------ 377
QR+SGN GVSLTLGL DSL T HQ F+ + I +GR + I E E+
Sbjct: 583 MAQRYSGNNNGVSLTLGLPHCDSLSSTDHQGFMQTHHGIPIGRRVKIGETEEYGPATING 642
Query: 376 AMNTSSPHSSAAA---YETISMQNPKRFAAQLLPDFV 275
+T++ HSSAAA Y +++QN KR+ AQLLPDFV
Sbjct: 643 GSSTTTAHSSAAAAAAYNGMNIQNQKRYVAQLLPDFV 679
>ref|NP_181138.1| BEL1-like homeobox 1 protein (BLH1); protein id: At2g35940.1,
supported by cDNA: gi_13877516, supported by cDNA:
gi_18176172, supported by cDNA: gi_20465476, supported
by cDNA: gi_20466775 [Arabidopsis thaliana]
gi|25408433|pir||H84774 probable homeodomain
transcription factor [imported] - Arabidopsis thaliana
gi|4510375|gb|AAD21463.1| putative homeodomain
transcription factor [Arabidopsis thaliana]
gi|18176173|gb|AAL59997.1| putative homeodomain
transcription factor [Arabidopsis thaliana]
gi|20465477|gb|AAM20198.1| putative homeodomain
transcription factor [Arabidopsis thaliana]
gi|20466776|gb|AAM20705.1| putative homeodomain
transcription factor [Arabidopsis thaliana]
Length = 680
Score = 93.6 bits (231), Expect = 3e-18
Identities = 69/157 (43%), Positives = 92/157 (57%), Gaps = 22/157 (14%)
Frame = -3
Query: 679 VKSNDANNEHLSMKFGDERQQGRD--GYSFMGNQTNFMGGFGQYPIGDIGRFDA----EQ 518
+ ++ ++NE L+MK +ERQ R GY FMGN FGQY + ++ RFD E
Sbjct: 530 INADFSSNEKLTMKILEERQGIRSDGGYPFMGN-------FGQYQMDEMSRFDVVSDQEL 582
Query: 517 FTQRFSGN--GVSLTLGL---DSLPGTH-QTFLPNQN-IQLGRGLDISEPNEFD------ 377
QR+SGN GVSLTLGL DSL TH Q F+ + I +GR + I E E+
Sbjct: 583 MAQRYSGNNNGVSLTLGLPHCDSLSSTHHQGFMQTHHGIPIGRRVKIGETEEYGPATING 642
Query: 376 AMNTSSPHSSAAA---YETISMQNPKRFAAQLLPDFV 275
+T++ HSSAAA Y +++QN KR+ AQLLPDFV
Sbjct: 643 GSSTTTAHSSAAAAAAYNGMNIQNQKRYVAQLLPDFV 679
>gb|AAN03621.1|AF406697_1 BEL1-related homeotic protein 5 [Solanum tuberosum]
Length = 688
Score = 57.4 bits (137), Expect = 2e-07
Identities = 48/159 (30%), Positives = 69/159 (43%), Gaps = 5/159 (3%)
Frame = -3
Query: 733 RNQEMMHSTNSV-PSIDMDVKSNDANNEHLSMKFGDERQQGRDGYSFMGNQTNFMGGFGQ 557
RN S +S+ S+DM+ K+ +++N+ +
Sbjct: 558 RNDMHKFSPSSILSSVDMEAKARESSNKGFTNPL-----------------------MAA 594
Query: 556 YPIGDIGRFDA--EQFTQRFSGN-GVSLTLGLDSLPGTHQTFLPNQNIQLGRGLDISEPN 386
Y +GD GRFD +Q T F GN GVSLTLGL P++N+ + N
Sbjct: 595 YAMGDFGRFDPHDQQMTANFHGNNGVSLTLGLP----------PSENLAMPVSQQNYLSN 644
Query: 385 EFDAMNTSSPHSSAAAYETISMQNP-KRFAAQLLPDFVT 272
+ + + H + YE I Q+ KRF QLLPDFVT
Sbjct: 645 DLGSRSEMGSHYNRMGYENIDFQSGNKRFPTQLLPDFVT 683
>gb|AAN03622.1|AF406698_1 BEL1-related homeotic protein 11 [Solanum tuberosum]
Length = 535
Score = 42.0 bits (97), Expect = 0.009
Identities = 48/162 (29%), Positives = 73/162 (44%), Gaps = 8/162 (4%)
Frame = -3
Query: 733 RNQEMMHSTNSVPSIDMDVKSNDANNEHL-SMKFGDERQQGRDGYSFMGNQTNFMGGFGQ 557
RN+ ST+++ S++ ++ + +E + S KF + Q R+ YS M FG
Sbjct: 400 RNEMQNCSTSTILSMEREIINKVVQDETIKSEKFNNT--QTRECYSLMTPNYTMDDQFGT 457
Query: 556 YPIGDIGRFDAEQFTQRFS------GNG-VSLTLGLDSLPGTHQTFLPNQNIQLGRGLDI 398
RF+ + Q + GNG VSLTLGL P + NQ+ +G
Sbjct: 458 -------RFNNQNHEQLATTTTFHQGNGHVSLTLGLP--PNSE-----NQHNYIGLENHY 503
Query: 397 SEPNEFDAMNTSSPHSSAAAYETISMQNPKRFAAQLLPDFVT 272
++P H +YE I Q+ KR+A QLL DFV+
Sbjct: 504 NQPT----------HHPNISYENIDFQSGKRYATQLLQDFVS 535
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 659,452,437
Number of Sequences: 1393205
Number of extensions: 14678088
Number of successful extensions: 35461
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 33823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35410
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34906576228
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
