Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000297A_C01 KMC000297A_c01
(584 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194179.1| putative protein kinase; protein id: At4g24480.... 60 2e-08
gb|AAK40361.1| CTR1-like protein kinase [Rosa hybrid cultivar] 48 1e-04
gb|AAL66190.1|AF386508_1 putative serine/threonine-specific prot... 44 0.002
ref|NP_195303.2| putative protein; protein id: At4g35780.1, supp... 43 0.003
pir||T04683 hypothetical protein F8D20.290 - Arabidopsis thalian... 42 0.004
>ref|NP_194179.1| putative protein kinase; protein id: At4g24480.1 [Arabidopsis
thaliana] gi|7488205|pir||T09911 probable
serine/threonine-specific protein kinase (EC 2.7.1.-)
T22A6.310 - Arabidopsis thaliana
gi|5051790|emb|CAB45083.1| putative protein kinase
[Arabidopsis thaliana] gi|7269298|emb|CAB79358.1|
putative protein kinase [Arabidopsis thaliana]
Length = 963
Score = 60.5 bits (145), Expect = 2e-08
Identities = 27/45 (60%), Positives = 35/45 (77%)
Frame = -1
Query: 584 LASLMESCWADDPADRPSFAKIVESLKKLLKSPADALKMG*T*GV 450
L SLME+CWAD+P+ RP+F IV++LKKLLKSP ++MG GV
Sbjct: 910 LVSLMEACWADEPSQRPAFGSIVDTLKKLLKSPVQLIQMGGDKGV 954
>gb|AAK40361.1| CTR1-like protein kinase [Rosa hybrid cultivar]
Length = 847
Score = 47.8 bits (112), Expect = 1e-04
Identities = 19/33 (57%), Positives = 29/33 (87%)
Frame = -1
Query: 584 LASLMESCWADDPADRPSFAKIVESLKKLLKSP 486
+AS++E+CWA++P RPSFA I+ESL+ L+K+P
Sbjct: 802 VASIIEACWANEPWKRPSFASIMESLRPLIKAP 834
>gb|AAL66190.1|AF386508_1 putative serine/threonine-specific protein kinase [Pyrus communis]
Length = 520
Score = 43.5 bits (101), Expect = 0.002
Identities = 17/33 (51%), Positives = 28/33 (84%)
Frame = -1
Query: 584 LASLMESCWADDPADRPSFAKIVESLKKLLKSP 486
+A+++E+CWA++P RPSFA I++SL L+K+P
Sbjct: 475 VAAIIEACWANEPWKRPSFAVIMDSLTPLIKAP 507
>ref|NP_195303.2| putative protein; protein id: At4g35780.1, supported by cDNA:
gi_20260235 [Arabidopsis thaliana]
gi|20260236|gb|AAM13016.1| putative protein [Arabidopsis
thaliana] gi|22136520|gb|AAM91338.1| putative protein
[Arabidopsis thaliana]
Length = 570
Score = 42.7 bits (99), Expect = 0.003
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = -1
Query: 584 LASLMESCWADDPADRPSFAKIVESLKKLLKSPAD 480
L L+E CW DPA RP+FA+I+E L +L++ D
Sbjct: 516 LTELLEKCWQQDPALRPNFAEIIEMLNQLIREVGD 550
>pir||T04683 hypothetical protein F8D20.290 - Arabidopsis thaliana
gi|3367596|emb|CAA20048.1| putative protein [Arabidopsis
thaliana] gi|7270530|emb|CAB81487.1| putative protein
[Arabidopsis thaliana]
Length = 553
Score = 42.4 bits (98), Expect = 0.004
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = -1
Query: 584 LASLMESCWADDPADRPSFAKIVESLKKLLKSPAD 480
L L+E CW DPA RP+FA+I+E L +L++ D
Sbjct: 499 LTELLEKCWQQDPALRPNFAEIIEMLNQLIREVID 533
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 465,149,677
Number of Sequences: 1393205
Number of extensions: 9091064
Number of successful extensions: 22471
Number of sequences better than 10.0: 825
Number of HSP's better than 10.0 without gapping: 22013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22469
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
