Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000296A_C01 KMC000296A_c01
(770 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_043940.1| nonstructural protein [Adeno-associated virus 3... 33 3.5
ref|NP_045759.1| nonstructural protein Rep78 [adeno-associated v... 33 4.5
gb|EAA17782.1| PR7 protein, putative [Plasmodium yoelii yoelii] 33 4.5
ref|NP_704458.1| hypothetical protein, conserved [Plasmodium fal... 32 7.7
ref|NP_504344.1| Predicted CDS, serpentine Receptor, class R SRR... 32 7.7
>ref|NP_043940.1| nonstructural protein [Adeno-associated virus 3]
gi|1408468|gb|AAC55048.1| nonstructural protein
Length = 624
Score = 33.5 bits (75), Expect = 3.5
Identities = 19/87 (21%), Positives = 38/87 (42%)
Frame = -2
Query: 277 NN*IMWLRQSSANNPHSRYLDENISRQSIGCIQRKVTGIYYLKWLNCHLARRREGSLLLY 98
N+ + W+ + + P +D N+ Q+ + K+ + ++W A
Sbjct: 24 NSFVNWVAEKEWDVPPDSDMDPNLIEQAPLTVAEKLQREFLVEWRRVSKA---------- 73
Query: 97 PRGITFVRLIPGHVCFYLHGLVERLGI 17
P + FV+ G F+LH L+E +G+
Sbjct: 74 PEALFFVQFEKGETYFHLHVLIETIGV 100
>ref|NP_045759.1| nonstructural protein Rep78 [adeno-associated virus 3B]
gi|2766609|gb|AAB95451.1| nonstructural protein Rep78
[adeno-associated virus 3B]
Length = 624
Score = 33.1 bits (74), Expect = 4.5
Identities = 19/87 (21%), Positives = 37/87 (41%)
Frame = -2
Query: 277 NN*IMWLRQSSANNPHSRYLDENISRQSIGCIQRKVTGIYYLKWLNCHLARRREGSLLLY 98
N+ + W+ + P +D N+ Q+ + K+ + ++W A
Sbjct: 24 NSFVNWVAEKEWELPPDSDMDPNLIEQAPLTVAEKLQREFLVEWRRVSKA---------- 73
Query: 97 PRGITFVRLIPGHVCFYLHGLVERLGI 17
P + FV+ G F+LH L+E +G+
Sbjct: 74 PEALFFVQFEKGETYFHLHVLIETIGV 100
>gb|EAA17782.1| PR7 protein, putative [Plasmodium yoelii yoelii]
Length = 803
Score = 33.1 bits (74), Expect = 4.5
Identities = 25/76 (32%), Positives = 36/76 (46%), Gaps = 1/76 (1%)
Frame = +3
Query: 333 FILETFIDCKARQKRNLYTQKLTEI*LSKKLCTHHKINSRAFVYSFLYIKSKSRGSVNMY 512
+IL+ I C + +Y + L +I +K C K S F Y F +K R S N+Y
Sbjct: 7 YILQCQIKCVNSKNEIIYKECLNDI---EKKCKDKKSCSYYFDYIFKTKNNKLRNSNNIY 63
Query: 513 YDKPV-SAKNEFKQKF 557
D + S +NE K F
Sbjct: 64 VDDCIDSDQNEIKSTF 79
>ref|NP_704458.1| hypothetical protein, conserved [Plasmodium falciparum 3D7]
gi|23499197|emb|CAD51277.1| hypothetical protein,
conserved [Plasmodium falciparum 3D7]
Length = 1284
Score = 32.3 bits (72), Expect = 7.7
Identities = 32/134 (23%), Positives = 57/134 (41%), Gaps = 4/134 (2%)
Frame = +3
Query: 369 QKRNLYTQKLTEI*-LSKKLCTHHKINSRAFVYSFLYIKSKSRGSVNMYYDKPVSAKNEF 545
+K+ +Y ++ L+K + +H INS F+Y + + S V +Y N+F
Sbjct: 846 EKKEIYNNVSNDLYDLNKPMLSHDNINSNMFIYKKIILYKSSYNKVTLYDTYNYLVNNKF 905
Query: 546 KQ---KFWYNNKR*NLHWSISIMLPFVKQNMGYDQN*IKTITQDPAES*FSNVQLFFPVQ 716
+ KF+ +K L+ I+I F ++N + K + D ++ P
Sbjct: 906 SKYFPKFFIYSK---LYIIINIKKSFYEKNFIMCYSLCKLLLND---------YIYDPCV 953
Query: 717 ITFTMISQKYVGSC 758
ITF +V SC
Sbjct: 954 ITF------FVNSC 961
>ref|NP_504344.1| Predicted CDS, serpentine Receptor, class R SRR-8 (srr-8)
[Caenorhabditis elegans] gi|7495929|pir||T03891
hypothetical protein C13D9.3 - Caenorhabditis elegans
gi|2291169|gb|AAB65303.1| Serpentine receptor, class r
protein 8 [Caenorhabditis elegans]
Length = 428
Score = 32.3 bits (72), Expect = 7.7
Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 12/147 (8%)
Frame = +1
Query: 28 VLPAHANRNTRVLGLA*RRLSLLDRARVI----LLFSLPSGNSAISNNIFQSPFVVCSRW 195
++P R RV L S LD+ R++ L FS+P FV W
Sbjct: 144 LIPKFCKRLVRVRMLRQAANSKLDKFRILHGLALGFSIPW-------------FVAMMSW 190
Query: 196 IVY*YFHQDIYYVDCLQNSASATLFNYCHF-VYFQN*VQSSSYVTCISSLKPS*TVRQDR 372
I+Y + H +YY Q+ A +F V+F + V + Y+ ++L + +
Sbjct: 191 IIYNFVHGKVYYGGPEQSIAKRIFLIISNFYVWFISTVCLAIYIFISAALNREVSYFNEE 250
Query: 373 ----RETCTHRN---LQKFSYQRNCVL 432
+E T RN L+KF +++N +L
Sbjct: 251 LKKAKEEKTLRNIGVLEKFDFRQNQIL 277
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 638,963,655
Number of Sequences: 1393205
Number of extensions: 13197962
Number of successful extensions: 26367
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 25473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26362
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 37815044670
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
