Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000294A_C01 KMC000294A_c01
(692 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180151.1| unknown protein; protein id: At2g25800.1 [Arabi... 97 2e-19
ref|NP_179591.1| unknown protein; protein id: At2g20010.1 [Arabi... 86 6e-16
ref|NP_180900.1| unknown protein; protein id: At2g33420.1 [Arabi... 69 6e-11
dbj|BAC43072.1| unknown protein [Arabidopsis thaliana] gi|290290... 69 6e-11
pir||A86177 hypothetical protein [imported] - Arabidopsis thalia... 65 7e-10
>ref|NP_180151.1| unknown protein; protein id: At2g25800.1 [Arabidopsis thaliana]
gi|25412344|pir||H84652 hypothetical protein At2g25800
[imported] - Arabidopsis thaliana
gi|3643603|gb|AAC42250.1| unknown protein [Arabidopsis
thaliana]
Length = 993
Score = 97.1 bits (240), Expect = 2e-19
Identities = 44/55 (80%), Positives = 51/55 (92%)
Frame = -3
Query: 690 LETYKSNARSRLPLPPTSGQWSPSEPNTLLRVLCYRNDDSASKFLKKTYDLPKKL 526
LE Y S+A+SRLPLPPTSGQW+ EPNTLLRVLCYRND+SA++FLKKTY+LPKKL
Sbjct: 939 LEAYGSSAKSRLPLPPTSGQWNGMEPNTLLRVLCYRNDESATRFLKKTYNLPKKL 993
>ref|NP_179591.1| unknown protein; protein id: At2g20010.1 [Arabidopsis thaliana]
gi|25411952|pir||H84583 hypothetical protein At2g20010
[imported] - Arabidopsis thaliana
gi|4580471|gb|AAD24395.1| unknown protein [Arabidopsis
thaliana]
Length = 952
Score = 85.5 bits (210), Expect = 6e-16
Identities = 40/55 (72%), Positives = 48/55 (86%)
Frame = -3
Query: 690 LETYKSNARSRLPLPPTSGQWSPSEPNTLLRVLCYRNDDSASKFLKKTYDLPKKL 526
LE + S+ R +LPLPPTSG WSP+EPNTLLRVLCYR D+ A+KFLKKTY+LP+KL
Sbjct: 898 LENHGSD-RGKLPLPPTSGPWSPTEPNTLLRVLCYRYDEPATKFLKKTYNLPRKL 951
>ref|NP_180900.1| unknown protein; protein id: At2g33420.1 [Arabidopsis thaliana]
gi|25408269|pir||C84745 hypothetical protein At2g33420
[imported] - Arabidopsis thaliana
gi|2459424|gb|AAB80659.1| unknown protein [Arabidopsis
thaliana]
Length = 1039
Score = 68.9 bits (167), Expect = 6e-11
Identities = 27/44 (61%), Positives = 40/44 (90%)
Frame = -3
Query: 660 RLPLPPTSGQWSPSEPNTLLRVLCYRNDDSASKFLKKTYDLPKK 529
+LP+PPT+G+W+ S+PNT+LRVLC+RND A++FLKK++ LPK+
Sbjct: 995 KLPMPPTTGRWNRSDPNTILRVLCHRNDRVANQFLKKSFQLPKR 1038
>dbj|BAC43072.1| unknown protein [Arabidopsis thaliana] gi|29029070|gb|AAO64914.1|
At2g33420 [Arabidopsis thaliana]
Length = 1039
Score = 68.9 bits (167), Expect = 6e-11
Identities = 27/44 (61%), Positives = 40/44 (90%)
Frame = -3
Query: 660 RLPLPPTSGQWSPSEPNTLLRVLCYRNDDSASKFLKKTYDLPKK 529
+LP+PPT+G+W+ S+PNT+LRVLC+RND A++FLKK++ LPK+
Sbjct: 995 KLPMPPTTGRWNRSDPNTILRVLCHRNDRVANQFLKKSFQLPKR 1038
>pir||A86177 hypothetical protein [imported] - Arabidopsis thaliana
gi|1903347|gb|AAB70427.1| EST gb|ATTS5672 comes from this
gene. [Arabidopsis thaliana]
Length = 1035
Score = 65.5 bits (158), Expect = 7e-10
Identities = 26/44 (59%), Positives = 39/44 (88%)
Frame = -3
Query: 660 RLPLPPTSGQWSPSEPNTLLRVLCYRNDDSASKFLKKTYDLPKK 529
+LP+PPT+G+W+ S+PNT+LRVLCYR+D A++FLKK++ L K+
Sbjct: 991 KLPMPPTTGRWNRSDPNTILRVLCYRDDRVANQFLKKSFQLGKR 1034
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 583,614,353
Number of Sequences: 1393205
Number of extensions: 12387200
Number of successful extensions: 27939
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 26910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27932
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31401661572
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
