Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000293A_C02 KMC000293A_c02
(583 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_182175.1| putative cellular apoptosis susceptibility prot... 104 7e-22
dbj|BAA92904.1| unnamed protein product [Oryza sativa (japonica ... 85 6e-16
sp|Q9PTU3|CSE1_PAGMA Importin-alpha re-exporter (Chromosome segr... 42 0.004
gb|AAN52370.1| cellular apoptosis susceptibility protein [Oreoch... 42 0.004
ref|XP_215944.1| similar to chromosome segregation 1-like (S. ce... 39 0.036
>ref|NP_182175.1| putative cellular apoptosis susceptibility protein; protein id:
At2g46520.1 [Arabidopsis thaliana]
gi|20138095|sp|Q9ZPY7|CSE1_ARATH Importin-alpha
re-exporter (Cellular apoptosis susceptibility protein
homolog) gi|25349694|pir||H84903 hypothetical protein
At2g46520 [imported] - Arabidopsis thaliana
gi|4415933|gb|AAD20163.1| putative cellular apoptosis
susceptibility protein [Arabidopsis thaliana]
gi|18077710|emb|CAC83300.1| cellular apoptosis
susceptibility protein homologue [Arabidopsis thaliana]
gi|20197825|gb|AAM15266.1| putative cellular apoptosis
susceptibility protein [Arabidopsis thaliana]
Length = 972
Score = 104 bits (260), Expect = 7e-22
Identities = 47/67 (70%), Positives = 59/67 (87%)
Frame = -2
Query: 582 FVRLYNAGKKEEDPLKDIADPRQFFVASLSQLSTVSPGRYPKVISENVDPANQSALVQLC 403
FV+L+NAGKKEEDPLKDI DP+QF VAS+S+LS+ SPGRYP++I EN++ ANQ+AL+QLC
Sbjct: 905 FVKLHNAGKKEEDPLKDIKDPKQFLVASVSRLSSASPGRYPQIIGENLEQANQTALIQLC 964
Query: 402 NTYNHSI 382
N YN I
Sbjct: 965 NAYNCGI 971
>dbj|BAA92904.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 983
Score = 85.1 bits (209), Expect = 6e-16
Identities = 40/68 (58%), Positives = 51/68 (74%)
Frame = -2
Query: 582 FVRLYNAGKKEEDPLKDIADPRQFFVASLSQLSTVSPGRYPKVISENVDPANQSALVQLC 403
FVRL AGK E+D LK++ DP+QF V SL+ LS SPGR+ +I +NVDPAN+ AL+QLC
Sbjct: 916 FVRLQYAGKSEDDLLKEVNDPKQFLVTSLATLSAQSPGRFGPIIEQNVDPANKGALIQLC 975
Query: 402 NTYNHSIV 379
YN +IV
Sbjct: 976 AAYNTNIV 983
>sp|Q9PTU3|CSE1_PAGMA Importin-alpha re-exporter (Chromosome segregation 1-like protein)
(Cellular apoptosis susceptibility protein)
gi|6693631|dbj|BAA89430.1| cellular apoptosis
susceptibility gene product [Pagrus major]
Length = 971
Score = 42.4 bits (98), Expect = 0.004
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = -2
Query: 582 FVRLYNAGKKEEDPLKD-IADPRQFFVASLSQLSTVSPGRYPKVISENVD 436
F +L AGKKE DP+ D + +P+ SL +LST PGR P ++S +++
Sbjct: 903 FSQLAFAGKKEHDPIGDAVGNPKILLAQSLHKLSTACPGRVPSMLSTSLN 952
>gb|AAN52370.1| cellular apoptosis susceptibility protein [Oreochromis niloticus]
Length = 971
Score = 42.4 bits (98), Expect = 0.004
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = -2
Query: 582 FVRLYNAGKKEEDPLKD-IADPRQFFVASLSQLSTVSPGRYPKVISENVD 436
F +L AGKKE DP+ D + +P+ SL +LST PGR P ++S +++
Sbjct: 903 FSQLAFAGKKEHDPIGDAVGNPKILLAQSLHKLSTACPGRVPSMLSTSLN 952
>ref|XP_215944.1| similar to chromosome segregation 1-like (S. cerevisiae) [Mus
musculus] [Rattus norvegicus]
Length = 152
Score = 39.3 bits (90), Expect = 0.036
Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = -2
Query: 582 FVRLYNAGKKEEDPL-KDIADPRQFFVASLSQLSTVSPGRYPKVISENVD 436
F +L AGKKE DP+ + + +PR +L +LST PGR P ++S +++
Sbjct: 84 FSQLAFAGKKEYDPVGQTVNNPRVHLAQALHRLSTACPGRVPSMVSTSLN 133
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 486,332,667
Number of Sequences: 1393205
Number of extensions: 10396681
Number of successful extensions: 23625
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 23014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23609
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
