Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000292A_C02 KMC000292A_c02
(862 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL57645.1| At2g47390/T8I13.23 [Arabidopsis thaliana] gi|2736... 75 1e-12
pir||F84914 hypothetical protein At2g47390 [imported] - Arabidop... 75 1e-12
ref|NP_182261.2| unknown protein; protein id: At2g47390.1 [Arabi... 75 1e-12
gb|ZP_00101779.1| hypothetical protein [Desulfitobacterium hafni... 39 0.076
ref|NP_421470.1| conserved hypothetical protein [Caulobacter cre... 37 0.38
>gb|AAL57645.1| At2g47390/T8I13.23 [Arabidopsis thaliana] gi|27363294|gb|AAO11566.1|
At2g47390/T8I13.23 [Arabidopsis thaliana]
Length = 960
Score = 75.5 bits (184), Expect = 1e-12
Identities = 41/77 (53%), Positives = 49/77 (63%)
Frame = -3
Query: 860 HGYTARESIMHVLWETDRWLHKYCVSNSSDNTDAVKENPSKGTTDAESKVVAASGGGSTE 681
HGY+ARESIMHVLWETDRWL KYCV N+SD + SK +D+ KV +GGG+ E
Sbjct: 888 HGYSARESIMHVLWETDRWLQKYCVPNTSDAD--TSPDQSKEGSDSADKVSTGTGGGNPE 945
Query: 680 ESDPEYEEFRSLPRSSL 630
E+E L RS L
Sbjct: 946 FG--EHEVHSKLRRSLL 960
>pir||F84914 hypothetical protein At2g47390 [imported] - Arabidopsis thaliana
gi|2275219|gb|AAB63841.1| unknown protein [Arabidopsis
thaliana]
Length = 955
Score = 75.5 bits (184), Expect = 1e-12
Identities = 41/77 (53%), Positives = 49/77 (63%)
Frame = -3
Query: 860 HGYTARESIMHVLWETDRWLHKYCVSNSSDNTDAVKENPSKGTTDAESKVVAASGGGSTE 681
HGY+ARESIMHVLWETDRWL KYCV N+SD + SK +D+ KV +GGG+ E
Sbjct: 883 HGYSARESIMHVLWETDRWLQKYCVPNTSDAD--TSPDQSKEGSDSADKVSTGTGGGNPE 940
Query: 680 ESDPEYEEFRSLPRSSL 630
E+E L RS L
Sbjct: 941 FG--EHEVHSKLRRSLL 955
>ref|NP_182261.2| unknown protein; protein id: At2g47390.1 [Arabidopsis thaliana]
Length = 961
Score = 75.5 bits (184), Expect = 1e-12
Identities = 41/77 (53%), Positives = 49/77 (63%)
Frame = -3
Query: 860 HGYTARESIMHVLWETDRWLHKYCVSNSSDNTDAVKENPSKGTTDAESKVVAASGGGSTE 681
HGY+ARESIMHVLWETDRWL KYCV N+SD + SK +D+ KV +GGG+ E
Sbjct: 889 HGYSARESIMHVLWETDRWLQKYCVPNTSDAD--TSPDQSKEGSDSADKVSTGTGGGNPE 946
Query: 680 ESDPEYEEFRSLPRSSL 630
E+E L RS L
Sbjct: 947 FG--EHEVHSKLRRSLL 961
>gb|ZP_00101779.1| hypothetical protein [Desulfitobacterium hafniense]
Length = 362
Score = 39.3 bits (90), Expect = 0.076
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = -3
Query: 860 HGYTARESIMHVLWETDRWLHKY 792
HGY ARESI+H+L ET+RWL Y
Sbjct: 323 HGYRARESILHMLAETNRWLDTY 345
>ref|NP_421470.1| conserved hypothetical protein [Caulobacter crescentus CB15]
gi|25397939|pir||B87580 conserved hypothetical protein
CC2671 [imported] - Caulobacter crescentus
gi|13424254|gb|AAK24638.1| conserved hypothetical
protein [Caulobacter crescentus CB15]
Length = 819
Score = 37.0 bits (84), Expect = 0.38
Identities = 14/23 (60%), Positives = 16/23 (68%)
Frame = -3
Query: 860 HGYTARESIMHVLWETDRWLHKY 792
HGY ARES H LWE +W+ KY
Sbjct: 787 HGYRARESTGHTLWEMAQWMDKY 809
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 745,099,847
Number of Sequences: 1393205
Number of extensions: 16007135
Number of successful extensions: 42868
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 41011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42839
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 45709790868
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
