Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000291A_C01 KMC000291A_c01
(886 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_148780.2| hypothetical protein XP_148780 [Mus musculus] g... 36 0.88
gb|ZP_00021683.1| hypothetical protein [Ralstonia metallidurans] 33 5.7
ref|XP_210315.1| similar to CREATINE KINASE, B CHAIN (B-CK) [Hom... 33 7.5
ref|NP_285648.1| N-glycosidase F, putative [Deinococcus radiodur... 33 7.5
gb|EAA20979.1| protein with 5'-3' exonuclease domain [Plasmodium... 32 9.8
>ref|XP_148780.2| hypothetical protein XP_148780 [Mus musculus]
gi|26325858|dbj|BAC26683.1| unnamed protein product [Mus
musculus]
Length = 168
Score = 35.8 bits (81), Expect = 0.88
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 6/117 (5%)
Frame = +1
Query: 475 ISTYTPSSKSPTNEEPSFCFSQACIGN*SRTSHTPNIYLSHNH-----TNFSSNISSSYQ 639
+ ++ SS SPT+ CI S +S P+ SH+ ++FSS+ SSS+
Sbjct: 26 VPSFPSSSLSPTSSSSLLSLLLLCILPSSHSSSFPSSPSSHSSSDFSPSSFSSSFSSSFP 85
Query: 640 CPEKCSLLSLHISSVFS-NILEPEGKISSGLVLEFDRSIFFPLRL*PTPNAELCKLS 807
P + LH+S + ++ P I S L+ FP P P+ LS
Sbjct: 86 SPSSPAFSPLHLSFILRLSLSSPSSSIFSLLL------FLFPPLFPPPPSQPSLSLS 136
>gb|ZP_00021683.1| hypothetical protein [Ralstonia metallidurans]
Length = 303
Score = 33.1 bits (74), Expect = 5.7
Identities = 17/57 (29%), Positives = 27/57 (46%)
Frame = +2
Query: 602 TLISHPTSAVPISVQKNVHCFLCIFPLSSPIYWNPKVKYLLV*F*NLIDQFFFH*DC 772
+L+ HP + +V NV CF+ + P + P++W L + N D FH C
Sbjct: 95 SLVFHPRNPYVPTVHMNVRCFIAVKPDAEPVWWFGGGMDLTPYYGNADDCAHFHRTC 151
>ref|XP_210315.1| similar to CREATINE KINASE, B CHAIN (B-CK) [Homo sapiens]
Length = 317
Score = 32.7 bits (73), Expect = 7.5
Identities = 18/42 (42%), Positives = 21/42 (49%)
Frame = +2
Query: 416 ASIKCVQLHTAETSPSYVSLSLHTHPAPSHQQMRSPPFASAR 541
A K Q T PS+ S L TH AP+H +R P A AR
Sbjct: 23 AGRKAGQGQMTYTDPSHFSPELRTHRAPAHALLRQPRGAEAR 64
>ref|NP_285648.1| N-glycosidase F, putative [Deinococcus radiodurans]
gi|7473581|pir||B75587 probable N-glycosidase F -
Deinococcus radiodurans (strain R1)
gi|6460749|gb|AAF12454.1|AE001863_79 N-glycosidase F,
putative [Deinococcus radiodurans]
Length = 654
Score = 32.7 bits (73), Expect = 7.5
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = -3
Query: 593 LKYILGVCDVLLQLPIHAWLKQKEGSSFVGDLELGVYVEIEIHNL 459
L I G CD + I A L KEG+ VG L+ G +E+ NL
Sbjct: 225 LGVIRGACDDTCKSAILALLPNKEGTQLVGALQSGKTARVEVTNL 269
>gb|EAA20979.1| protein with 5'-3' exonuclease domain [Plasmodium yoelii yoelii]
Length = 367
Score = 32.3 bits (72), Expect = 9.8
Identities = 14/36 (38%), Positives = 22/36 (60%)
Frame = +1
Query: 16 YYFIKLGRLIFHDLKRYKLCQQLLKKFNLHQQSIDT 123
+ FI + I+HD++ Y +++ KKFNL SI T
Sbjct: 298 FQFIVKTKNIYHDIESYNKNKEIFKKFNLSYDSIST 333
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 701,809,005
Number of Sequences: 1393205
Number of extensions: 15039810
Number of successful extensions: 39648
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 37556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39578
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 47939536764
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
