Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000290A_C02 KMC000290A_c02
(774 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF19398.1|AF203882_1 dynamin homolog [Astragalus sinicus] 130 2e-29
pir||B86237 protein F14N23.17 [imported] - Arabidopsis thaliana ... 81 2e-14
gb|AAF22291.1|AF180732_1 dynamin-like protein 6 [Arabidopsis tha... 81 2e-14
ref|NP_172500.1| putative phragmoplastin; protein id: At1g10290.... 81 2e-14
ref|NP_176170.1| dynamin-like protein; protein id: At1g59610.1, ... 77 2e-13
>gb|AAF19398.1|AF203882_1 dynamin homolog [Astragalus sinicus]
Length = 930
Score = 130 bits (328), Expect = 2e-29
Identities = 64/76 (84%), Positives = 66/76 (86%), Gaps = 4/76 (5%)
Frame = -3
Query: 772 SSSGPSDDWRSAFDAAANGPVSRSGSSRSGSNGHTRHNSDPAQNGD----SGSNSGSRRT 605
SS G DDWRSAFDAAAN PVSRSGSSRSGSNGH+RH SDPAQNGD S SNSGSRRT
Sbjct: 855 SSGGLGDDWRSAFDAAANSPVSRSGSSRSGSNGHSRHYSDPAQNGDVNSSSNSNSGSRRT 914
Query: 604 PNRLPPAPPGSSGYRY 557
PNRLPPAPPGSSGY+Y
Sbjct: 915 PNRLPPAPPGSSGYKY 930
>pir||B86237 protein F14N23.17 [imported] - Arabidopsis thaliana
gi|4914331|gb|AAD32879.1|AC005489_17 F14N23.17
[Arabidopsis thaliana]
Length = 992
Score = 80.9 bits (198), Expect = 2e-14
Identities = 43/76 (56%), Positives = 50/76 (65%), Gaps = 4/76 (5%)
Frame = -3
Query: 772 SSSGPSDDWRSAFDAAANGPVSRSGSSRSGSNGHTRHNSDPAQNGDS---GSNSGSRRTP 602
S DDW +AF++AANGP S+ GS GH+R SDPAQNGD+ GS S R TP
Sbjct: 919 SGGSSGDDWMNAFNSAANGP--SDSLSKYGSGGHSRRYSDPAQNGDAASPGSGSNRRTTP 976
Query: 601 NRLPPAPPGS-SGYRY 557
NRLPPAPP + S YRY
Sbjct: 977 NRLPPAPPPTGSAYRY 992
>gb|AAF22291.1|AF180732_1 dynamin-like protein 6 [Arabidopsis thaliana]
Length = 914
Score = 80.9 bits (198), Expect = 2e-14
Identities = 43/76 (56%), Positives = 50/76 (65%), Gaps = 4/76 (5%)
Frame = -3
Query: 772 SSSGPSDDWRSAFDAAANGPVSRSGSSRSGSNGHTRHNSDPAQNGDS---GSNSGSRRTP 602
S DDW +AF++AANGP S+ GS GH+R SDPAQNGD+ GS S R TP
Sbjct: 841 SGGSSGDDWMNAFNSAANGP--SDSLSKYGSGGHSRRYSDPAQNGDAASPGSGSNRRTTP 898
Query: 601 NRLPPAPPGS-SGYRY 557
NRLPPAPP + S YRY
Sbjct: 899 NRLPPAPPPTGSAYRY 914
>ref|NP_172500.1| putative phragmoplastin; protein id: At1g10290.1, supported by cDNA:
gi_6651398 [Arabidopsis thaliana]
Length = 914
Score = 80.9 bits (198), Expect = 2e-14
Identities = 43/76 (56%), Positives = 50/76 (65%), Gaps = 4/76 (5%)
Frame = -3
Query: 772 SSSGPSDDWRSAFDAAANGPVSRSGSSRSGSNGHTRHNSDPAQNGDS---GSNSGSRRTP 602
S DDW +AF++AANGP S+ GS GH+R SDPAQNGD+ GS S R TP
Sbjct: 841 SGGSSGDDWMNAFNSAANGP--SDSLSKYGSGGHSRRYSDPAQNGDAASPGSGSNRRTTP 898
Query: 601 NRLPPAPPGS-SGYRY 557
NRLPPAPP + S YRY
Sbjct: 899 NRLPPAPPPTGSAYRY 914
>ref|NP_176170.1| dynamin-like protein; protein id: At1g59610.1, supported by cDNA:
gi_15146178, supported by cDNA: gi_4803835, supported by
cDNA: gi_6526968 [Arabidopsis thaliana]
gi|25453548|pir||T52426 dynamin-like protein [imported] -
Arabidopsis thaliana gi|6526969|dbj|BAA88111.1|
dynamin-like protein [Arabidopsis thaliana]
gi|15146179|gb|AAK83573.1| At1g59610/T30E16_17
[Arabidopsis thaliana] gi|23397259|gb|AAN31911.1|
putative dynamin protein [Arabidopsis thaliana]
Length = 920
Score = 77.4 bits (189), Expect = 2e-13
Identities = 45/75 (60%), Positives = 51/75 (68%), Gaps = 4/75 (5%)
Frame = -3
Query: 769 SSGPSDDWRSAFDAAANGPVSRSGSSRSGSNGHTRHNSDPAQNGDSGSNSGS---RRTPN 599
SSG +DW +AF+AAA+GP S R GS GH+R SDPAQNG+ S SG R TPN
Sbjct: 851 SSG--EDWMNAFNAAASGPDSLK---RYGSGGHSRRYSDPAQNGEDSSGSGGSSRRTTPN 905
Query: 598 RLPPAPPGS-SGYRY 557
RLPPAPP S S YRY
Sbjct: 906 RLPPAPPQSGSSYRY 920
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 721,642,045
Number of Sequences: 1393205
Number of extensions: 17377958
Number of successful extensions: 59324
Number of sequences better than 10.0: 211
Number of HSP's better than 10.0 without gapping: 49487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57885
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38095156112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
