Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000287A_C02 KMC000287A_c02
(485 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK77899.1|AF397027_1 root nodule extensin [Pisum sativum] 38 0.068
gb|AAB66702.1| protease 1 [Pneumocystis carinii f. sp. carinii] 36 0.20
dbj|BAB86089.1| P0506A10.22 [Oryza sativa (japonica cultivar-gro... 35 0.44
gb|AAK53449.1| unknown [Streptomyces aureofaciens] 35 0.44
dbj|BAB39873.1| putative protein kinase [Oryza sativa (japonica ... 35 0.44
>gb|AAK77899.1|AF397027_1 root nodule extensin [Pisum sativum]
Length = 195
Score = 37.7 bits (86), Expect = 0.068
Identities = 27/62 (43%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Frame = +1
Query: 319 LLPSMFFTQSTAILHFSF----TATQTCNSSAPPRTPNPPPPHIRRKTP---SSPFAPPX 477
L+ S T + AIL FSF +A Q SS PP +PPPP K P SSP PP
Sbjct: 4 LMASASLTLALAILFFSFPSEISANQYSYSSPPPPVHSPPPP----KDPYHYSSPPPPPV 59
Query: 478 HS 483
H+
Sbjct: 60 HT 61
>gb|AAB66702.1| protease 1 [Pneumocystis carinii f. sp. carinii]
Length = 926
Score = 36.2 bits (82), Expect = 0.20
Identities = 19/50 (38%), Positives = 22/50 (44%)
Frame = +1
Query: 325 PSMFFTQSTAILHFSFTATQTCNSSAPPRTPNPPPPHIRRKTPSSPFAPP 474
PS +Q S AT T +S PP P PPPP P+ P PP
Sbjct: 697 PSDLSSQQDPDTSLSSNATSTSSSELPPLPPPPPPPAPAPPAPAPPPPPP 746
>dbj|BAB86089.1| P0506A10.22 [Oryza sativa (japonica cultivar-group)]
Length = 613
Score = 35.0 bits (79), Expect = 0.44
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +1
Query: 403 PPRTPNPPPPHIRRKTPSSPFAPPXH 480
PPR P PPPPH P P PP H
Sbjct: 116 PPRPPPPPPPHPPEDPPPHPPHPPDH 141
>gb|AAK53449.1| unknown [Streptomyces aureofaciens]
Length = 579
Score = 35.0 bits (79), Expect = 0.44
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +1
Query: 373 TATQTCNSSAPPRTPNPPPPHIRRKTPSSPFAPPXH 480
T +T + AP P PPP +RR+ P P APP H
Sbjct: 486 TRDRTAGTRAPASPPGAPPP-VRRRRPPPPRAPPPH 520
>dbj|BAB39873.1| putative protein kinase [Oryza sativa (japonica cultivar-group)]
Length = 698
Score = 35.0 bits (79), Expect = 0.44
Identities = 14/27 (51%), Positives = 19/27 (69%)
Frame = +1
Query: 394 SSAPPRTPNPPPPHIRRKTPSSPFAPP 474
S PP +PPPPH R++P +P+APP
Sbjct: 150 SDTPPVVQSPPPPH--RRSPRTPWAPP 174
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 432,362,303
Number of Sequences: 1393205
Number of extensions: 9520976
Number of successful extensions: 65195
Number of sequences better than 10.0: 131
Number of HSP's better than 10.0 without gapping: 43124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60290
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13980339936
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
