Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000285A_C01 KMC000285A_c01
(547 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK32190.1| spike glycoprotein [Human coronavirus 229E] 33 2.9
gb|AAK32189.1| spike glycoprotein [Human coronavirus 229E] 33 2.9
gb|AAK32191.1| spike glycoprotein [Human coronavirus 229E] 33 2.9
ref|NP_073551.1| surface glycoprotein [Human coronavirus 229E] g... 33 2.9
gb|AAK32188.1| spike glycoprotein [Human coronavirus 229E] 33 2.9
>gb|AAK32190.1| spike glycoprotein [Human coronavirus 229E]
Length = 1173
Score = 32.7 bits (73), Expect = 2.9
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -3
Query: 257 YMCVNIILSIIIILFLLFCVLFSTCC*FVNCLADYISLVC 138
++C++++L I ++ LL C + CC F +C A I C
Sbjct: 1119 WLCISVVL-IFVVSMLLLCCCSTGCCGFFSCFASSIRGCC 1157
>gb|AAK32189.1| spike glycoprotein [Human coronavirus 229E]
Length = 1173
Score = 32.7 bits (73), Expect = 2.9
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -3
Query: 257 YMCVNIILSIIIILFLLFCVLFSTCC*FVNCLADYISLVC 138
++C++++L I ++ LL C + CC F +C A I C
Sbjct: 1119 WLCISVVL-IFVVSMLLLCCCSTGCCGFFSCFASSIRGCC 1157
>gb|AAK32191.1| spike glycoprotein [Human coronavirus 229E]
Length = 1173
Score = 32.7 bits (73), Expect = 2.9
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -3
Query: 257 YMCVNIILSIIIILFLLFCVLFSTCC*FVNCLADYISLVC 138
++C++++L I ++ LL C + CC F +C A I C
Sbjct: 1119 WLCISVVL-IFVVSMLLLCCCSTGCCGFFSCFASSIRGCC 1157
>ref|NP_073551.1| surface glycoprotein [Human coronavirus 229E]
gi|138175|sp|P15423|VGL2_CVH22 E2 GLYCOPROTEIN PRECURSOR
(SPIKE GLYCOPROTEIN) (PEPLOMER PROTEIN)
gi|74845|pir||VGIHHC E2 glycoprotein precursor - human
coronavirus (strain 229E) gi|58927|emb|CAA34723.1|
precursor (AA-15 to 1158) [Human coronavirus 229E]
gi|12082741|gb|AAG48592.1|AF304460_3 surface glycoprotein
[Human coronavirus 229E]
Length = 1173
Score = 32.7 bits (73), Expect = 2.9
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -3
Query: 257 YMCVNIILSIIIILFLLFCVLFSTCC*FVNCLADYISLVC 138
++C++++L I ++ LL C + CC F +C A I C
Sbjct: 1119 WLCISVVL-IFVVSMLLLCCCSTGCCGFFSCFASSIRGCC 1157
>gb|AAK32188.1| spike glycoprotein [Human coronavirus 229E]
Length = 1173
Score = 32.7 bits (73), Expect = 2.9
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -3
Query: 257 YMCVNIILSIIIILFLLFCVLFSTCC*FVNCLADYISLVC 138
++C++++L I ++ LL C + CC F +C A I C
Sbjct: 1119 WLCISVVL-IFVVSMLLLCCCSTGCCGFFSCFASSIRGCC 1157
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 471,269,770
Number of Sequences: 1393205
Number of extensions: 9917674
Number of successful extensions: 25821
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 24046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25752
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
