Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000284A_C01 KMC000284A_c01
(582 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_179911.1| leucine-rich repeat transmembrane protein kinas... 166 2e-40
ref|NP_195442.1| leucine-rich repeat transmembrane protein kinas... 152 2e-36
gb|AAL57701.1| AT4g37250/C7A10_110 [Arabidopsis thaliana] gi|250... 152 2e-36
ref|NP_201529.1| leucine-rich repeat transmembrane protein kinas... 146 2e-34
gb|AAL06915.1| AT5g67280/K3G17_4 [Arabidopsis thaliana] 146 2e-34
>ref|NP_179911.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At2g23300.1 [Arabidopsis thaliana]
gi|7446365|pir||T00502 probable receptor-like protein
kinase At2g23300 [imported] - Arabidopsis thaliana
gi|2642433|gb|AAB87101.1| putative receptor-like protein
kinase [Arabidopsis thaliana]
Length = 773
Score = 166 bits (421), Expect = 2e-40
Identities = 83/131 (63%), Positives = 100/131 (75%), Gaps = 1/131 (0%)
Frame = -2
Query: 581 SPSPSSISGVSPYSAPESLRNLKPHPKWDVYSFGVLFLELLTGKVVVLDDMSQAGPGLLV 402
SPSPSS+ +SPY APESLRNLKP+PKWDV+ FGV+ LELLTGK+V +D++ G GL V
Sbjct: 643 SPSPSSVGPISPYCAPESLRNLKPNPKWDVFGFGVILLELLTGKIVSIDEVG-VGNGLTV 701
Query: 401 EDPNRALRMVDVTIRADMEGKEEALLAYFKLGYSCVCGVPQKRPQMKEVLQILEKTP-SS 225
ED NRAL M DV IR+++EGKE+ LL FKLGYSC +PQKRP MKE L + E+ P SS
Sbjct: 702 EDGNRALIMADVAIRSELEGKEDFLLGLFKLGYSCASQIPQKRPTMKEALVVFERYPISS 761
Query: 224 SPSSFSYYYSH 192
S S SY+Y H
Sbjct: 762 SAKSPSYHYGH 772
>ref|NP_195442.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At4g37250.1 [Arabidopsis thaliana]
gi|25387059|pir||B85440 receptor kinase-like protein
[imported] - Arabidopsis thaliana
gi|4006856|emb|CAB16774.1| receptor kinase-like protein
[Arabidopsis thaliana] gi|7270708|emb|CAB80391.1|
receptor kinase-like protein [Arabidopsis thaliana]
Length = 766
Score = 152 bits (385), Expect = 2e-36
Identities = 79/132 (59%), Positives = 99/132 (74%), Gaps = 2/132 (1%)
Frame = -2
Query: 581 SPSPSSISGVSPYSAPESLRNLKPHPKWDVYSFGVLFLELLTGKVVVLDDMSQAGPGLLV 402
SPSPSS+ +SPY APES R+LKP PKWDVY FGV+ LELLTGK+V ++++ G GL V
Sbjct: 636 SPSPSSVGAMSPYCAPESFRSLKPSPKWDVYGFGVILLELLTGKIVSVEEI-VLGNGLTV 694
Query: 401 EDPNRALRMVDVTIRADMEGKEEALLAYFKLGYSCVCGVPQKRPQMKEVLQILEK-TPSS 225
ED +RA+RM DV IR +++GK+E LL FKLGYSC VPQKRP MKE L +LE+ P+S
Sbjct: 695 EDGHRAVRMADVAIRGELDGKQEFLLDCFKLGYSCASPVPQKRPTMKESLAVLERFHPNS 754
Query: 224 SP-SSFSYYYSH 192
S S S++Y H
Sbjct: 755 SVIKSSSFHYGH 766
>gb|AAL57701.1| AT4g37250/C7A10_110 [Arabidopsis thaliana] gi|25090184|gb|AAN72248.1|
At4g37250/C7A10_110 [Arabidopsis thaliana]
Length = 768
Score = 152 bits (385), Expect = 2e-36
Identities = 79/132 (59%), Positives = 99/132 (74%), Gaps = 2/132 (1%)
Frame = -2
Query: 581 SPSPSSISGVSPYSAPESLRNLKPHPKWDVYSFGVLFLELLTGKVVVLDDMSQAGPGLLV 402
SPSPSS+ +SPY APES R+LKP PKWDVY FGV+ LELLTGK+V ++++ G GL V
Sbjct: 638 SPSPSSVGAMSPYCAPESFRSLKPSPKWDVYGFGVILLELLTGKIVSVEEI-VLGNGLTV 696
Query: 401 EDPNRALRMVDVTIRADMEGKEEALLAYFKLGYSCVCGVPQKRPQMKEVLQILEK-TPSS 225
ED +RA+RM DV IR +++GK+E LL FKLGYSC VPQKRP MKE L +LE+ P+S
Sbjct: 697 EDGHRAVRMADVAIRGELDGKQEFLLDCFKLGYSCASPVPQKRPTMKESLAVLERFHPNS 756
Query: 224 SP-SSFSYYYSH 192
S S S++Y H
Sbjct: 757 SVIKSSSFHYGH 768
>ref|NP_201529.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At5g67280.1, supported by cDNA: 110712., supported
by cDNA: gi_15809975 [Arabidopsis thaliana]
gi|9759277|dbj|BAB09647.1| receptor-like protein kinase
[Arabidopsis thaliana] gi|24111449|gb|AAN46893.1|
At5g67280/K3G17_4 [Arabidopsis thaliana]
Length = 751
Score = 146 bits (368), Expect = 2e-34
Identities = 70/120 (58%), Positives = 93/120 (77%)
Frame = -2
Query: 581 SPSPSSISGVSPYSAPESLRNLKPHPKWDVYSFGVLFLELLTGKVVVLDDMSQAGPGLLV 402
SPSPS S PY+APESLR++KP+ KWDVYSFGV+ LELLTGK+VV+D++ Q GL++
Sbjct: 630 SPSPSPSSVGLPYNAPESLRSIKPNSKWDVYSFGVILLELLTGKIVVVDELGQVN-GLVI 688
Query: 401 EDPNRALRMVDVTIRADMEGKEEALLAYFKLGYSCVCGVPQKRPQMKEVLQILEKTPSSS 222
+D RA+RM D IRA++EGKEEA+LA K+G +C +PQ+RP +KE LQ+LE+ P S
Sbjct: 689 DDGERAIRMADSAIRAELEGKEEAVLACLKMGLACASPIPQRRPNIKEALQVLERFPVHS 748
>gb|AAL06915.1| AT5g67280/K3G17_4 [Arabidopsis thaliana]
Length = 751
Score = 146 bits (368), Expect = 2e-34
Identities = 70/120 (58%), Positives = 93/120 (77%)
Frame = -2
Query: 581 SPSPSSISGVSPYSAPESLRNLKPHPKWDVYSFGVLFLELLTGKVVVLDDMSQAGPGLLV 402
SPSPS S PY+APESLR++KP+ KWDVYSFGV+ LELLTGK+VV+D++ Q GL++
Sbjct: 630 SPSPSPSSVGLPYNAPESLRSIKPNSKWDVYSFGVILLELLTGKIVVVDELGQVN-GLVI 688
Query: 401 EDPNRALRMVDVTIRADMEGKEEALLAYFKLGYSCVCGVPQKRPQMKEVLQILEKTPSSS 222
+D RA+RM D IRA++EGKEEA+LA K+G +C +PQ+RP +KE LQ+LE+ P S
Sbjct: 689 DDGERAIRMADSAIRAELEGKEEAVLACLKMGLACASPIPQRRPNIKEALQVLERFPVHS 748
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 524,491,505
Number of Sequences: 1393205
Number of extensions: 12442093
Number of successful extensions: 56643
Number of sequences better than 10.0: 2420
Number of HSP's better than 10.0 without gapping: 45574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52933
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
