Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000281A_C02 KMC000281A_c02
(701 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB10162.1| auxin response factor-like protein [Arabidopsis ... 92 9e-18
ref|NP_201007.1| auxin response transcription factor; protein id... 92 9e-18
gb|AAC49752.1| ARF1-binding protein [Arabidopsis thaliana] gi|20... 89 8e-17
emb|CAC83756.1| auxin response factor 1 [Oryza sativa (japonica ... 76 5e-13
gb|AAG43286.2|AF140228_1 putative auxin response factor 1 [Oryza... 74 3e-12
>dbj|BAB10162.1| auxin response factor-like protein [Arabidopsis thaliana]
gi|23397283|gb|AAN31923.1| auxin response factor
[Arabidopsis thaliana]
Length = 859
Score = 91.7 bits (226), Expect = 9e-18
Identities = 41/65 (63%), Positives = 52/65 (79%)
Frame = -2
Query: 700 DMMLVGDDPWQEFCSMVRKIYIYPKEEIQKMSPGTLSSKNEENLSASEGTDAKEVKAQLH 521
DMMLVGDDPWQEFC MVRKI+IY KEE++KM+PGTLS ++EE EG+DAK+ K+ +
Sbjct: 791 DMMLVGDDPWQEFCCMVRKIFIYTKEEVRKMNPGTLSCRSEEEAVVGEGSDAKDAKSASN 850
Query: 520 QKLNS 506
L+S
Sbjct: 851 PSLSS 855
>ref|NP_201007.1| auxin response transcription factor; protein id: At5g62010.1,
supported by cDNA: gi_2245393 [Arabidopsis thaliana]
gi|12484201|gb|AAG53999.1|AF336918_1 ARF2 [Arabidopsis
thaliana]
Length = 454
Score = 91.7 bits (226), Expect = 9e-18
Identities = 41/65 (63%), Positives = 52/65 (79%)
Frame = -2
Query: 700 DMMLVGDDPWQEFCSMVRKIYIYPKEEIQKMSPGTLSSKNEENLSASEGTDAKEVKAQLH 521
DMMLVGDDPWQEFC MVRKI+IY KEE++KM+PGTLS ++EE EG+DAK+ K+ +
Sbjct: 386 DMMLVGDDPWQEFCCMVRKIFIYTKEEVRKMNPGTLSCRSEEEAVVGEGSDAKDAKSASN 445
Query: 520 QKLNS 506
L+S
Sbjct: 446 PSLSS 450
>gb|AAC49752.1| ARF1-binding protein [Arabidopsis thaliana]
gi|20146085|emb|CAD29696.1| putative auxin-induced
protein 26 [Arabidopsis thaliana]
gi|20372805|emb|CAD30210.1| putative auxin-induced
protein 30 [Arabidopsis thaliana]
Length = 454
Score = 88.6 bits (218), Expect = 8e-17
Identities = 40/65 (61%), Positives = 51/65 (77%)
Frame = -2
Query: 700 DMMLVGDDPWQEFCSMVRKIYIYPKEEIQKMSPGTLSSKNEENLSASEGTDAKEVKAQLH 521
DMMLVGDDPWQEFC MVRKI+IY KEE++KM+ GTLS ++EE EG+DAK+ K+ +
Sbjct: 386 DMMLVGDDPWQEFCCMVRKIFIYTKEEVRKMNQGTLSCRSEEEAVVGEGSDAKDAKSASN 445
Query: 520 QKLNS 506
L+S
Sbjct: 446 PSLSS 450
>emb|CAC83756.1| auxin response factor 1 [Oryza sativa (japonica cultivar-group)]
Length = 836
Score = 75.9 bits (185), Expect = 5e-13
Identities = 37/70 (52%), Positives = 52/70 (73%), Gaps = 3/70 (4%)
Frame = -2
Query: 700 DMMLVGDDPWQEFCSMVRKIYIYPKEEIQKMSPGTLSSKNEEN--LSASEGTDAKEVKAQ 527
DMMLVGDDPW EFC MV KI+IY +EE+Q+M+PGTL+S++E++ S G+ +E++
Sbjct: 766 DMMLVGDDPWIEFCDMVHKIFIYTREEVQRMNPGTLNSRSEDSHANSMERGSVGREMRGC 825
Query: 526 LH-QKLNSDN 500
L LNS+N
Sbjct: 826 LSTSSLNSEN 835
>gb|AAG43286.2|AF140228_1 putative auxin response factor 1 [Oryza sativa (indica
cultivar-group)]
Length = 857
Score = 73.6 bits (179), Expect = 3e-12
Identities = 36/70 (51%), Positives = 51/70 (72%), Gaps = 3/70 (4%)
Frame = -2
Query: 700 DMMLVGDDPWQEFCSMVRKIYIYPKEEIQKMSPGTLSSKNEEN--LSASEGTDAKEVKAQ 527
DMMLVGDDPW EFC MV KI+IY +EE+Q+M+PGTL+ ++E++ S G+ +E++
Sbjct: 787 DMMLVGDDPWIEFCDMVHKIFIYTREEVQRMNPGTLNLRSEDSHANSMERGSVGREMRGC 846
Query: 526 LH-QKLNSDN 500
L LNS+N
Sbjct: 847 LSTSSLNSEN 856
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 581,443,602
Number of Sequences: 1393205
Number of extensions: 12186500
Number of successful extensions: 25208
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 24513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25206
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 32250355128
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
