Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000279A_C01 KMC000279A_c01
(733 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN17444.1| eukaryotic initiation factor 4, eIF4-like protein... 134 1e-30
ref|NP_200595.1| eukaryotic initiation factor 4, eIF4-like prote... 133 2e-30
dbj|BAB08857.1| eukaryotic initiation factor 4, eIF4-like protei... 133 2e-30
gb|AAN72067.1| eukaryotic initiation factor 4, eIF4-like protein... 133 2e-30
ref|NP_179983.1| putative eukaryotic initiation factor 4, eIF4; ... 122 7e-27
>gb|AAN17444.1| eukaryotic initiation factor 4, eIF4-like protein [Arabidopsis
thaliana] gi|28059736|gb|AAO30087.1| eukaryotic
initiation factor 4, eIF4-like protein [Arabidopsis
thaliana]
Length = 780
Score = 134 bits (337), Expect = 1e-30
Identities = 65/110 (59%), Positives = 89/110 (80%), Gaps = 1/110 (0%)
Frame = -2
Query: 732 PVXNLLEYLFIKKILTNGDIGSGCLSFGSQLDDIGIDLPKAPSNFGEIIGKVILAGGLDF 553
P+ LLEYL KK++ DI +G L +G+ LDDIGIDLPKAP+NFGEI+GK+ILAGG+DF
Sbjct: 671 PIATLLEYLLSKKVVAPKDIETGFLLYGAMLDDIGIDLPKAPNNFGEIVGKLILAGGVDF 730
Query: 552 KVVKEILQKMDDDLFQRAVFDSAVGVI-SSASGQAVLESQKSDIEACQSL 406
K+V+EI+ KM+DD FQ+ V D+AV ++ SS G+++L SQ +DIEAC++L
Sbjct: 731 KLVREIIGKMEDDRFQKMVVDAAVRIVESSEQGKSLLASQAADIEACRNL 780
>ref|NP_200595.1| eukaryotic initiation factor 4, eIF4-like protein; protein id:
At5g57870.1, supported by cDNA: gi_15810454, supported by
cDNA: gi_20258962 [Arabidopsis thaliana]
gi|15810455|gb|AAL07115.1| putative eukaryotic initiation
factor eIF4 [Arabidopsis thaliana]
gi|20258963|gb|AAM14197.1| putative eukaryotic initiation
factor 4 [Arabidopsis thaliana]
Length = 780
Score = 133 bits (335), Expect = 2e-30
Identities = 64/110 (58%), Positives = 89/110 (80%), Gaps = 1/110 (0%)
Frame = -2
Query: 732 PVXNLLEYLFIKKILTNGDIGSGCLSFGSQLDDIGIDLPKAPSNFGEIIGKVILAGGLDF 553
P+ LLEYL KK++ D+ +G L +G+ LDDIGIDLPKAP+NFGEI+GK+ILAGG+DF
Sbjct: 671 PIATLLEYLLSKKVVAPKDLETGFLLYGAMLDDIGIDLPKAPNNFGEIVGKLILAGGVDF 730
Query: 552 KVVKEILQKMDDDLFQRAVFDSAVGVI-SSASGQAVLESQKSDIEACQSL 406
K+V+EI+ KM+DD FQ+ V D+AV ++ SS G+++L SQ +DIEAC++L
Sbjct: 731 KLVREIIGKMEDDRFQKMVVDAAVRIVESSEQGKSLLASQAADIEACRNL 780
>dbj|BAB08857.1| eukaryotic initiation factor 4, eIF4-like protein [Arabidopsis
thaliana]
Length = 751
Score = 133 bits (335), Expect = 2e-30
Identities = 64/110 (58%), Positives = 89/110 (80%), Gaps = 1/110 (0%)
Frame = -2
Query: 732 PVXNLLEYLFIKKILTNGDIGSGCLSFGSQLDDIGIDLPKAPSNFGEIIGKVILAGGLDF 553
P+ LLEYL KK++ D+ +G L +G+ LDDIGIDLPKAP+NFGEI+GK+ILAGG+DF
Sbjct: 642 PIATLLEYLLSKKVVAPKDLETGFLLYGAMLDDIGIDLPKAPNNFGEIVGKLILAGGVDF 701
Query: 552 KVVKEILQKMDDDLFQRAVFDSAVGVI-SSASGQAVLESQKSDIEACQSL 406
K+V+EI+ KM+DD FQ+ V D+AV ++ SS G+++L SQ +DIEAC++L
Sbjct: 702 KLVREIIGKMEDDRFQKMVVDAAVRIVESSEQGKSLLASQAADIEACRNL 751
>gb|AAN72067.1| eukaryotic initiation factor 4, eIF4-like protein [Arabidopsis
thaliana]
Length = 776
Score = 133 bits (335), Expect = 2e-30
Identities = 64/110 (58%), Positives = 89/110 (80%), Gaps = 1/110 (0%)
Frame = -2
Query: 732 PVXNLLEYLFIKKILTNGDIGSGCLSFGSQLDDIGIDLPKAPSNFGEIIGKVILAGGLDF 553
P+ LLEYL KK++ D+ +G L +G+ LDDIGIDLPKAP+NFGEI+GK+ILAGG+DF
Sbjct: 667 PIATLLEYLLSKKVVAPKDLETGFLLYGAMLDDIGIDLPKAPNNFGEIVGKLILAGGVDF 726
Query: 552 KVVKEILQKMDDDLFQRAVFDSAVGVI-SSASGQAVLESQKSDIEACQSL 406
K+V+EI+ KM+DD FQ+ V D+AV ++ SS G+++L SQ +DIEAC++L
Sbjct: 727 KLVREIIGKMEDDRFQKMVVDAAVRIVESSEQGKSLLASQAADIEACRNL 776
>ref|NP_179983.1| putative eukaryotic initiation factor 4, eIF4; protein id:
At2g24050.1, supported by cDNA: gi_17064835 [Arabidopsis
thaliana] gi|25370720|pir||A84632 probable eukaryotic
initiation factor 4, eIF4 [imported] - Arabidopsis
thaliana gi|3738332|gb|AAC63673.1| putative eukaryotic
initiation factor 4, eIF4 [Arabidopsis thaliana]
Length = 747
Score = 122 bits (305), Expect = 7e-27
Identities = 56/111 (50%), Positives = 87/111 (77%), Gaps = 1/111 (0%)
Frame = -2
Query: 732 PVXNLLEYLFIKKILTNGDIGSGCLSFGSQLDDIGIDLPKAPSNFGEIIGKVILAGGLDF 553
P+ LL++L K +LT+ D+G+GCL +GS LDDIGIDLPKAP++FGE +G+++ A LDF
Sbjct: 637 PIAKLLKHLISKNVLTSKDLGAGCLLYGSMLDDIGIDLPKAPNSFGEFLGELVSAKVLDF 696
Query: 552 KVVKEILQKMDDDLFQRAVFDSAV-GVISSASGQAVLESQKSDIEACQSLL 403
++V+++L+KM+D+ F++ V ++ + V SGQ+VL+SQ ++EACQSLL
Sbjct: 697 ELVRDVLKKMEDEWFRKTVLNAVIKSVRECPSGQSVLDSQAVEVEACQSLL 747
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 602,978,958
Number of Sequences: 1393205
Number of extensions: 12626178
Number of successful extensions: 30041
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 28867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30021
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34625071581
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
