Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000278A_C01 KMC000278A_c01
(717 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187366.1| putative Sec24-like COPII protein; protein id: ... 88 1e-16
gb|AAM97042.1| putative Sec24-like COPII protein [Arabidopsis th... 88 1e-16
sp|Q9M291|S24C_ARATH Protein transport protein Sec24-like CEF gi... 34 2.3
pir||T47424 hypothetical protein T22K7.20 - Arabidopsis thaliana... 34 2.3
ref|NP_566869.1| putative protein; protein id: At3g44340.1, supp... 34 2.3
>ref|NP_187366.1| putative Sec24-like COPII protein; protein id: At3g07100.1
[Arabidopsis thaliana] gi|13124526|sp|Q9SFU0|S24A_ARATH
Putative protein transport protein Sec24-like At3g07100
gi|6642655|gb|AAF20236.1|AC012395_23 putative Sec24-like
COPII protein [Arabidopsis thaliana]
Length = 1054
Score = 88.2 bits (217), Expect = 1e-16
Identities = 38/60 (63%), Positives = 50/60 (83%)
Frame = -1
Query: 717 MKFLEKLRNTDRAYYQLCHLVXQGEXPKEGFLLLANLVEDQMGGNSGYADWMLQISRQVQ 538
M+ ++KLR +D +Y+ +C LV QGE P+EGFLLL NL+EDQMGG+SGY DW+LQ+ RQVQ
Sbjct: 993 MRLVKKLRESDPSYHPMCFLVRQGEQPREGFLLLRNLIEDQMGGSSGYVDWILQLHRQVQ 1052
>gb|AAM97042.1| putative Sec24-like COPII protein [Arabidopsis thaliana]
gi|23197930|gb|AAN15492.1| putative Sec24-like COPII
protein [Arabidopsis thaliana]
Length = 1038
Score = 88.2 bits (217), Expect = 1e-16
Identities = 38/60 (63%), Positives = 50/60 (83%)
Frame = -1
Query: 717 MKFLEKLRNTDRAYYQLCHLVXQGEXPKEGFLLLANLVEDQMGGNSGYADWMLQISRQVQ 538
M+ ++KLR +D +Y+ +C LV QGE P+EGFLLL NL+EDQMGG+SGY DW+LQ+ RQVQ
Sbjct: 977 MRLVKKLRESDPSYHPMCFLVRQGEQPREGFLLLRNLIEDQMGGSSGYVDWILQLHRQVQ 1036
>sp|Q9M291|S24C_ARATH Protein transport protein Sec24-like CEF gi|11229586|emb|CAC16574.1|
cef protein [Arabidopsis thaliana]
Length = 1097
Score = 33.9 bits (76), Expect = 2.3
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = -1
Query: 684 RAYYQLCHLVXQGEXPKEGFLLLANLVEDQMGGNSGYADWMLQISRQVQH 535
R+ Y L +G+ P L + +VED+ G + Y D+++ + RQ+QH
Sbjct: 1046 RSSYLRIKLCKKGD-PAGNMLFQSYMVEDRGSGGASYVDFLVSVHRQIQH 1094
>pir||T47424 hypothetical protein T22K7.20 - Arabidopsis thaliana
gi|7529768|emb|CAB86912.1| putative protein [Arabidopsis
thaliana]
Length = 1122
Score = 33.9 bits (76), Expect = 2.3
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = -1
Query: 684 RAYYQLCHLVXQGEXPKEGFLLLANLVEDQMGGNSGYADWMLQISRQVQH 535
R+ Y L +G+ P L + +VED+ G + Y D+++ + RQ+QH
Sbjct: 1071 RSSYLRIKLCKKGD-PAGNMLFQSYMVEDRGSGGASYVDFLVSVHRQIQH 1119
>ref|NP_566869.1| putative protein; protein id: At3g44340.1, supported by cDNA:
gi_11229585 [Arabidopsis thaliana]
Length = 1096
Score = 33.9 bits (76), Expect = 2.3
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = -1
Query: 684 RAYYQLCHLVXQGEXPKEGFLLLANLVEDQMGGNSGYADWMLQISRQVQH 535
R+ Y L +G+ P L + +VED+ G + Y D+++ + RQ+QH
Sbjct: 1045 RSSYLRIKLCKKGD-PAGNMLFQSYMVEDRGSGGASYVDFLVSVHRQIQH 1093
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 627,750,755
Number of Sequences: 1393205
Number of extensions: 13964997
Number of successful extensions: 34096
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 32716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34056
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33217548346
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
